RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 DPP10Q8N608 796 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 POU5F2Q8N7G0 328 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 COX18Q8N8Q8 333 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 C9orf43Q8TAL5 461 aaPredicted RBP9.51□□□□□ -0.89
SKA1-204ENST00000488454 ZFP90Q8TF47 636 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 HAS2Q92819 552 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 GIMAP5Q96F15 307 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 BTBD9Q96Q07 612 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 RASL10BQ96S79 203 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 STACQ99469 402 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 SH3GL1Q99961 368 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.51□□□□□ -0.89
SKA1-204ENST00000488454 NXF5Q9H1B4 397 aaKnown RBP9.51□□□□□ -0.89
SKA1-204ENST00000488454 TPT1P8Q9HAU6 139 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 EXD2Q9NVH0 621 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 HPF1Q9NWY4 346 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 GIN1Q9NXP7 522 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 CBLCQ9ULV8 474 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 CORO2BQ9UQ03 480 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 DTX4Q9Y2E6 619 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 NPFFR2Q9Y5X5 522 aa9.51□□□□□ -0.89
SKA1-204ENST00000488454 TPRP12270 2363 aaKnown RBP9.51□□□□□ -0.89
SKA1-204ENST00000488454 TMEM247A6NEH6 219 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 FBP2O00757 339 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TP53I11O14683 189 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TO15178 435 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 HS6ST1O60243 411 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 DPM1O60762 260 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 REM1O75628 298 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 NKX2-2O95096 273 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 WDPCPO95876 746 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 ESRRAP11474 423 aaPredicted RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 NAGAP17050 411 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 IL12BP29460 328 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TRHRP34981 398 aaPredicted RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 CD96P40200 585 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 CRATP43155 626 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 KHKP50053 298 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 HLCSP50747 726 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 CASP9P55211 416 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 CORO7P57737 925 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 RPP38P78345 283 aaKnown RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 MRPS22P82650 360 aaKnown RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 PSG6Q00889 435 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 PLCXD2Q0VAA5 305 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 KRT72Q14CN4 511 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 DECR1Q16698 335 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TRMT5Q32P41 509 aaKnown RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 LACTB2Q53H82 288 aaPredicted RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 DLEU7Q6UYE1 221 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 ASB18Q6ZVZ8 466 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 RNF130Q86XS8 419 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 SLC34A3Q8N130 599 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 FITM2Q8N6M3 262 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 ZNF441Q8N8Z8 693 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 SLC16A11Q8NCK7 471 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 OR52N2Q8NGI0 321 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 FBXO30Q8TB52 745 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 PNPT1Q8TCS8 783 aaKnown RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 XAGE5Q8WWM1 108 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TTC9Q92623 222 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TMBIM1Q969X1 311 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TMEM125Q96AQ2 219 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 ROPN1LQ96C74 230 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 LRRC58Q96CX6 371 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 RCN3Q96D15 328 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 NSL1Q96IY1 281 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 SGCZQ96LD1 299 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 OR7D2Q96RA2 312 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 CGREF1Q99674 301 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 THUMPD3Q9BV44 507 aaKnown RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 TRIM4Q9C037 500 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 RNF32Q9H0A6 362 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TSPAN10Q9H1Z9 355 aaPredicted RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 PIGUQ9H490 435 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 ZBTB20Q9HC78 741 aaPredicted RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 DUSP22Q9NRW4 184 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 GPATCH2Q9NW75 528 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 THUMPD1Q9NXG2 353 aaKnown RBP9.5□□□□□ -0.89
SKA1-204ENST00000488454 ANKRD10Q9NXR5 420 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 PLA2G3Q9NZ20 509 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 SLAMF8Q9P0V8 285 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 LRFN1Q9P244 771 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 TAGLN3Q9UI15 199 aa9.5□□□□□ -0.89
SKA1-204ENST00000488454 ANKRD11Q6UB99 2663 aaPredicted RBP9.49□□□□□ -0.89
SKA1-204ENST00000488454 OR5H15A6NDH6 313 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 FAM181BA6NEQ2 426 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 ASNA1O43681 348 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 OR6B1O95007 311 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 AK1P00568 194 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 F10P00742 488 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 OR12D1P0DN82 309 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 ACP2P11117 423 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 ATP6V1C1P21283 382 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 ABCD3P28288 659 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 PIGAP37287 484 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 SOX3P41225 446 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 RFX3P48380 749 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 NUDT2P50583 147 aa9.49□□□□□ -0.89
SKA1-204ENST00000488454 RPS26P62854 115 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms