RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 OTUB1Q96FW1 271 aaPredicted RBP13.53□□□□□ -0.24
USP4-212ENST00000486549 SLC35A4Q96G79 324 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 C16orf58Q96GQ5 468 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 MAELQ96JY0 434 aaKnown RBP13.53□□□□□ -0.24
USP4-212ENST00000486549 OSBPL11Q9BXB4 747 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 ANGPTL4Q9BY76 406 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 ZFP64Q9NPA5 681 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 CBLCQ9ULV8 474 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 ZNF407Q9C0G0 2248 aa13.53□□□□□ -0.24
USP4-212ENST00000486549 A0A1B0GTH9 108 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 A0A1B0GUH1 482 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 GXYLT2A0PJZ3 443 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 ANKRD33BA6NCL7 494 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 C2orf72A6NCS6 295 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 PRAMEF25A6NGN4 478 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 LRRC3CA6NJW4 275 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 E9PBE3 544 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 GNB5O14775 395 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 SLC19A2O60779 497 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 CELA3AP09093 270 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 RFPL3SP0C7P2 107 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 ACP2P11117 423 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 ABOP16442 354 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 CCT3P49368 545 aaKnown RBP13.52□□□□□ -0.25
USP4-212ENST00000486549 WNT3P56703 355 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 HBA1P69905 142 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 PSPHP78330 225 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 EFR3AQ14156 821 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 DECR1Q16698 335 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.52□□□□□ -0.25
USP4-212ENST00000486549 FAM174BQ3ZCQ3 159 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 VPS26BQ4G0F5 336 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 CYP27C1Q4G0S4 372 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 C4orf17Q53FE4 359 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 SPANXN4Q5MJ08 99 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 MFSD12Q6NUT3 480 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 EPGNQ6UW88 154 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 BNC2Q6ZN30 1099 aaPredicted RBP13.52□□□□□ -0.25
USP4-212ENST00000486549 ACAD11Q709F0 780 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 GALNT10Q86SR1 603 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 PACS2Q86VP3 889 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 FJX1Q86VR8 437 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 ANKRD46Q86W74 232 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 FAM109AQ8N4B1 249 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 CDRT4Q8N9R6 151 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 OR8J2Q8NGG1 315 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 OR4A15Q8NGL6 344 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 TESCQ96BS2 214 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 RMND5BQ96G75 393 aaPredicted RBP13.52□□□□□ -0.25
USP4-212ENST00000486549 TEX37Q96LM6 180 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 GALNT9Q9HCQ5 603 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 NEUROD4Q9HD90 331 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 NTMQ9P121 344 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 B4GALT7Q9UBV7 327 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 PLEKHB1Q9UF11 243 aaPredicted RBP13.52□□□□□ -0.25
USP4-212ENST00000486549 ERRFI1Q9UJM3 462 aaPredicted RBP13.52□□□□□ -0.25
USP4-212ENST00000486549 LIPGQ9Y5X9 500 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 GPR45Q9Y5Y3 372 aa13.52□□□□□ -0.25
USP4-212ENST00000486549 GTF3C1Q12789 2109 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 WIPF3A6NGB9 483 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 TTC36A6NLP5 189 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 UBDO15205 165 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 POLR3GO15318 223 aaPredicted RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 LRRTM2O43300 516 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 ABCB7O75027 752 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 ICOSLGO75144 302 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 TRIM3O75382 744 aaPredicted RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 SNX4O95219 450 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 KCNH1O95259 989 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 CPSF4O95639 269 aaKnown RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 HMGN2P05204 90 aaKnown RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 STSP08842 583 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 ALOX5P09917 674 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 CYP4B1P13584 511 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 IDO1P14902 403 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 GDF1P27539 372 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 S100A3P33764 101 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 PRIM2P49643 509 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 DGKQP52824 942 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 PNLIPRP2P54317 469 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 AQP5P55064 265 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 LASP1Q14847 261 aaKnown RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 DPY19L1Q2PZI1 675 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 ANGPTL8Q6UXH0 198 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 CLEC4FQ8N1N0 589 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 SLC16A11Q8NCK7 471 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 OR56A1Q8NGH5 318 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 SFXN5Q8TD22 340 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 THOC1Q96FV9 657 aaKnown RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 ZBTB18Q99592 522 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 EBF4Q9BQW3 602 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 LDAHQ9H6V9 325 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 EXO5Q9H790 373 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 ZNF703Q9H7S9 590 aaPredicted RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 ZDHHC11Q9H8X9 412 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 MRTO4Q9UKD2 239 aaKnown RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 PCDHGB4Q9UN71 923 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 USP9YO00507 2555 aaPredicted RBP13.51□□□□□ -0.25
USP4-212ENST00000486549 DNAJC13O75165 2243 aa13.51□□□□□ -0.25
USP4-212ENST00000486549 FREM3P0C091 2139 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms