RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 B4DXG7 233 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 PLOD3O60568 738 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 GLRA3O75311 464 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 CPN1P15169 458 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 DDCP20711 480 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 GRK2P25098 689 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 SRD5A2P31213 254 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 MPIP34949 423 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 OPRM1P35372 400 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 PEX19P40855 299 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 MC3RP41968 323 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 NCBP2P52298 156 aaKnown RBP eCLIP19.57■□□□□ 0.72
USP40-215ENST00000484528 GFRA1P56159 465 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 EFR3AQ14156 821 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 TMEM107Q6UX40 140 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 CDC20BQ86Y33 519 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 GCNT2Q8N0V5 402 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 LINC01560Q8TB33 94 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 RMND5BQ96G75 393 aaPredicted RBP19.57■□□□□ 0.72
USP40-215ENST00000484528 SFXN2Q96NB2 322 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 G6PC3Q9BUM1 346 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 C12orf65Q9H3J6 166 aaKnown RBP19.57■□□□□ 0.72
USP40-215ENST00000484528 TNFRSF12AQ9NP84 129 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 MIEF1Q9NQG6 463 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 TAS2R9Q9NYW1 312 aa19.57■□□□□ 0.72
USP40-215ENST00000484528 FOXD3Q9UJU5 478 aaPredicted RBP19.57■□□□□ 0.72
USP40-215ENST00000484528 RPH3AQ9Y2J0 694 aaPredicted RBP19.57■□□□□ 0.72
USP40-215ENST00000484528 TUBAL3A6NHL2 446 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 SMIM23A6NLE4 172 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 CLCA1A8K7I4 914 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 MYO1GB0I1T2 1018 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 SCO2O43819 266 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 CRCPO75575 148 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 PROCP04070 461 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 SHBGP04278 402 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 FRMD7Q6ZUT3 714 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 INTS12Q96CB8 462 aaKnown RBP19.56■□□□□ 0.72
USP40-215ENST00000484528 CCDC126Q96EE4 140 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 ST6GALNAC2Q9UJ37 374 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 PLEKHA6Q9Y2H5 1048 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 NF1P21359 2839 aa19.56■□□□□ 0.72
USP40-215ENST00000484528 FAM221AA4D161 298 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 FLNAP21333 2647 aaKnown RBP19.55■□□□□ 0.72
USP40-215ENST00000484528 LHX2P50458 406 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 PNLIPRP2P54317 469 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 GAS1P54826 345 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 PSG6Q00889 435 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 STX5Q13190 355 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 FBXW10Q5XX13 1052 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 FAM71E1Q6IPT2 247 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 LUZP2Q86TE4 346 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 OR4K17Q8NGC6 315 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 GOT1L1Q8NHS2 421 aaPredicted RBP19.55■□□□□ 0.72
USP40-215ENST00000484528 MYNNQ9NPC7 610 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 SIRT5Q9NXA8 310 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 FLRT3Q9NZU0 649 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 CLCF1Q9UBD9 225 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 PTGDR2Q9Y5Y4 395 aa19.55■□□□□ 0.72
USP40-215ENST00000484528 SERTM1A2A2V5 107 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 PLOD2O00469 737 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 COQ9O75208 318 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 IL18BPO95998 194 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 DPP4P27487 766 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 NTSP30990 170 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 CLDN18P56856 261 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 CFAP157Q5JU67 520 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 AAGABQ6PD74 315 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 ADGRE4PQ86SQ3 457 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 KIF18BQ86Y91 864 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 CCDC63Q8NA47 563 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 PUM2Q8TB72 1066 aaKnown RBP eCLIP19.54■□□□□ 0.72
USP40-215ENST00000484528 RNF138Q8WVD3 245 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 UBLCP1Q8WVY7 318 aaPredicted RBP19.54■□□□□ 0.72
USP40-215ENST00000484528 TM9SF2Q99805 663 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 STMN4Q9H169 189 aaPredicted RBP19.54■□□□□ 0.72
USP40-215ENST00000484528 JKAMPQ9P055 326 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 PPP4R1LQ9P1A2 415 aa19.54■□□□□ 0.72
USP40-215ENST00000484528 PLIN3O60664 434 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 EVI2BP34910 448 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 GSTM5P46439 218 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 CPA2P48052 419 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 RFX3P48380 749 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 CLEC6AQ6EIG7 209 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 SH2D5Q6ZV89 423 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 GRAMD2AQ8IUY3 354 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 UBQLNLQ8IYU4 475 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 NINJ1Q92982 152 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 SFXN3Q9BWM7 321 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 RBM24Q9BX46 236 aaKnown RBP19.53■□□□□ 0.72
USP40-215ENST00000484528 DSN1Q9H410 356 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 GLIPR2Q9H4G4 154 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 DDX18Q9NVP1 670 aaKnown RBP19.53■□□□□ 0.72
USP40-215ENST00000484528 GALNT8Q9NY28 637 aa19.53■□□□□ 0.72
USP40-215ENST00000484528 A0A087WV62 115 aa19.52■□□□□ 0.72
USP40-215ENST00000484528 UPK1AO00322 258 aa19.52■□□□□ 0.72
USP40-215ENST00000484528 ZIC3O60481 467 aa19.52■□□□□ 0.72
USP40-215ENST00000484528 DIAPH2O60879 1101 aa19.52■□□□□ 0.72
USP40-215ENST00000484528 RCBTB2O95199 551 aa19.52■□□□□ 0.72
USP40-215ENST00000484528 EPXP11678 715 aa19.52■□□□□ 0.72
USP40-215ENST00000484528 ZNF708P17019 499 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms