RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 NCF4Q15080 339 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 RBBP7Q16576 425 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 COL28A1Q2UY09 1125 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 NKAIN1Q4KMZ8 207 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 C6orf163Q5TEZ5 329 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 C1orf189Q5VU69 101 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 LIPMQ5VYY2 423 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 TRIM40Q6P9F5 258 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 INO80CQ6PI98 192 aaPredicted RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 CYHR1Q6ZMK1 362 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 CMC1Q7Z7K0 106 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 ASPGQ86U10 573 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 VASH2Q86V25 355 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 CEP97Q8IW35 865 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 SRRM1Q8IYB3 904 aaKnown RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 DSELQ8IZU8 1212 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 DNAJC22Q8N4W6 341 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 FAM47BQ8NA70 645 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 OR1L3Q8NH93 324 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 APOBEC4Q8WW27 367 aaKnown RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 DDB2Q92466 427 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 TM9SF4Q92544 642 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 PYCR2Q96C36 320 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 SMC6Q96SB8 1091 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 MRPL57Q9BQC6 102 aaKnown RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 QTRT1Q9BXR0 403 aaKnown RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 CENPHQ9H3R5 247 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 ACTL8Q9H568 366 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 ACTR8Q9H981 624 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 MOV10Q9HCE1 1003 aaKnown RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 MKKSQ9NPJ1 570 aaPredicted RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 PFDN4Q9NQP4 134 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 SENP1Q9P0U3 644 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 TBK1Q9UHD2 729 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 GRID1Q9ULK0 1009 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 SLC22A14Q9Y267 594 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 PTRH2Q9Y3E5 179 aaKnown RBP5.85□□□□□ -1.47
PTCD3-208ENST00000469585 KLK4Q9Y5K2 254 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 DMDP11532 3685 aa5.85□□□□□ -1.47
PTCD3-208ENST00000469585 H0YGG7 62 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 H0YIG0 161 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 H3BQF6 201 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 K7EPI3 171 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 CLDN4O14493 209 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 MAP2K7O14733 419 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 HAT1O14929 419 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 RGS16O15492 202 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 UGDHO60701 494 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 PIAS1O75925 651 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 MLYCDO95822 493 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 OTCP00480 354 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 F7P08709 466 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 SLC35E2BP0CK96 405 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 C1GALT1C1LP0DN25 315 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 MYL2P10916 166 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 TLX1P31314 330 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 OTX2P32243 289 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 HNF4AP41235 474 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ARF3P61204 181 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 RHAGQ02094 409 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 IFT88Q13099 833 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 FAM53BQ14153 422 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 TGIF1Q15583 401 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 TRADDQ15628 312 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ZKSCAN8Q15776 578 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 CCDC153Q494R4 210 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 CCSMST1Q4G0I0 132 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 GXYLT1Q4G148 440 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ATG9BQ674R7 924 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 MED27Q6P2C8 311 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 SBSNQ6UWP8 590 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 TMIGD1Q6UXZ0 262 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 MBOAT1Q6ZNC8 495 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 SPATA6LQ8N4H0 392 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 MFSD9Q8NBP5 474 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 LSM14AQ8ND56 463 aaKnown RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 CT55Q8WUE5 264 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 KCTD4Q8WVF5 259 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 PTERQ96BW5 349 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 RHBDF1Q96CC6 855 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 NXNL1Q96CM4 212 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 PPM1MQ96MI6 270 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 WDR83Q9BRX9 315 aaKnown RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 FUT8Q9BYC5 575 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ROPN1BQ9BZX4 212 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 SPRTNQ9H040 489 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ADNPQ9H2P0 1102 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 EHD1Q9H4M9 534 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 WDR54Q9H977 334 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ROPN1Q9HAT0 212 aaPredicted RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 CLK4Q9HAZ1 481 aaKnown RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 AHSPQ9NZD4 102 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ABI3Q9P2A4 366 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 DHCR7Q9UBM7 475 aaKnown RBP5.84□□□□□ -1.47
PTCD3-208ENST00000469585 TRPC4Q9UBN4 977 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 TEKT2Q9UIF3 430 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 SNX6Q9UNH7 406 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 KLHL20Q9Y2M5 609 aa5.84□□□□□ -1.47
PTCD3-208ENST00000469585 ACACAQ13085 2346 aa5.83□□□□□ -1.48
PTCD3-208ENST00000469585 URB1O60287 2271 aaKnown RBP5.83□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms