RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 SLC6A17Q9H1V8 727 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MTHFD2LQ9H903 347 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 DCAF13Q9NV06 445 aaKnown RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 FAM96BQ9Y3D0 163 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 TJP1Q07157 1748 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CRHBPP24387 322 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 VIPR1P32241 457 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 GLO1Q04760 184 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 HSPB3Q12988 150 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MLC1Q15049 377 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 C15orf54Q8N8G6 183 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 KCT2Q8NC54 265 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 EBF4Q9BQW3 602 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 TRAV6A0A075B6T7 132 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 OR1F1O43749 312 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 STSP08842 583 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ARL2P36404 184 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 SCAND1P57086 179 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 PLA2G7Q13093 441 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MEP1AQ16819 746 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZNF585AQ6P3V2 769 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 COX15Q7KZN9 410 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZMIZ2Q8NF64 920 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 PXT1Q8NFP0 134 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MTPAPQ9NVV4 582 aaKnown RBP eCLIP6.85□□□□□ -1.31
VPS53-204ENST00000437048 ADAM29Q9UKF5 820 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 AQP9O43315 295 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 TBL1XO60907 577 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 RAB3DO95716 219 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SFTPBP07988 381 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SULT1A2P50226 295 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 CNIH2Q6PI25 160 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ZNF546Q86UE3 836 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 LILRB2Q8N423 598 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 OR4M1Q8NGD0 313 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 MAGEB1P43366 347 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SOX10P56693 466 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 GBX1Q14549 363 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 DUSP28Q4G0W2 176 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 PRAMEF18Q5VWM3 479 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 KCTD9Q7L273 389 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ZNF619Q8N2I2 560 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 DBF4BQ8NFT6 615 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 OR4K14Q8NGD5 310 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SIGLEC10Q96LC7 697 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SAP130Q9H0E3 1048 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 OLAHQ9NV23 265 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 CPSF4LA6NMK7 179 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 RNASET2O00584 256 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 ABHD16AO95870 558 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 RPL17P18621 184 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 CPOXP36551 454 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 FNTBP49356 437 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 MAP6Q96JE9 813 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 PIGVQ9NUD9 493 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 EPHB6O15197 1021 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 GPR39O43194 453 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 FGF3P11487 239 aaPredicted RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 PCBD1P61457 104 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 MICAQ29983 383 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 TTLL10Q6ZVT0 673 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SULF2Q8IWU5 870 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 OR52N2Q8NGI0 321 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 GGHQ92820 318 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ZNF566Q969W8 418 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 MARC2Q969Z3 335 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 AMDHD1Q96NU7 426 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 FAM166BA8MTA8 275 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ANKRD66B4E2M5 251 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 GABARAPO95166 117 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 GLUD1P00367 558 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 DCNP07585 359 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 CTSHP09668 335 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 CHRNA4P43681 627 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 NOXRED1Q6NXP6 359 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 NRSN1Q8IZ57 195 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 OR56B1Q8NGI3 324 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 LRR1Q96L50 414 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 FERD3LQ96RJ6 166 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ARPC5LQ9BPX5 153 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 OR51I1Q9H343 314 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 MOB1AQ9H8S9 216 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 B4GALT7Q9UBV7 327 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 PCTPQ9UKL6 214 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 UTS2RQ9UKP6 389 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 CLCA3PQ9Y6N3 262 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 hCG_1807616A0A1W2PRN6 198 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 TMEM212A6NML5 194 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 PIP5K1CO60331 668 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 TECRLQ5HYJ1 363 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 OR5H6Q8NGV6 325 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 STRA6Q9BX79 667 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 SLC2A6Q9UGQ3 507 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 MOKQ9UQ07 419 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 NAV1Q8NEY1 1877 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 ANKRD36CQ5JPF3 1778 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 E7EQ34 232 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 HAS3O00219 553 aa6.84□□□□□ -1.31
VPS53-204ENST00000437048 NUDT21O43809 227 aaKnown RBP6.84□□□□□ -1.31
VPS53-204ENST00000437048 APODP05090 189 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms