RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 SLC35A4Q96G79 324 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 FAM111AQ96PZ2 611 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 KCNA7Q96RP8 456 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 ZNF382Q96SR6 550 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 C1QTNF3Q9BXJ4 246 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 TSPYL1Q9H0U9 437 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 JKAMPQ9P055 326 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 TMEM216Q9P0N5 145 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 PACSIN3Q9UKS6 424 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 NFU1Q9UMS0 254 aa13.16□□□□□ -0.3
SDC1-204ENST00000429035 EIF3LQ9Y262 564 aaKnown RBP13.16□□□□□ -0.3
SDC1-204ENST00000429035 FLNAP21333 2647 aaKnown RBP13.16□□□□□ -0.3
SDC1-204ENST00000429035 UQCRHLA0A096LP55 91 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 GOLGA8RI6L899 631 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 SEC14L5O43304 696 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 TSPAN2O60636 221 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 COQ9O75208 318 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 ULK1O75385 1050 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 GFRA1P56159 465 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 RAE1P78406 368 aaKnown RBP13.15□□□□□ -0.3
SDC1-204ENST00000429035 IMPG1Q17R60 797 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 KRTAP21-3Q3LHN1 58 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 SPDYAQ5MJ70 313 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 LGSNQ5TDP6 509 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 PPP4R4Q6NUP7 873 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 Q71RC1 249 aaPredicted RBP13.15□□□□□ -0.3
SDC1-204ENST00000429035 SAMD14Q8IZD0 417 aaPredicted RBP13.15□□□□□ -0.3
SDC1-204ENST00000429035 OR7G2Q8NG99 324 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 OR4N2Q8NGD1 307 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 SMPDL3BQ92485 455 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 NTNG2Q96CW9 530 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 VSTM2LQ96N03 204 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 DACH2Q96NX9 599 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 G6PC3Q9BUM1 346 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 PIGMQ9H3S5 423 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 PLEKHF2Q9H8W4 249 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 NEUROD4Q9HD90 331 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 SLC35C2Q9NQQ7 365 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 TIMM22Q9Y584 194 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 PCNX3Q9H6A9 2034 aa13.15□□□□□ -0.3
SDC1-204ENST00000429035 A0A1W2PNV4 684 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 GMFGO60234 142 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 DLX3O60479 287 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 GOSR1O95249 250 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 TGM6O95932 706 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 JUNP05412 331 aaKnown RBP13.14□□□□□ -0.31
SDC1-204ENST00000429035 CT45A8P0DMV1 189 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 CT45A9P0DMV2 189 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 ZNF708P17019 499 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 HK1P19367 917 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 CHMP24386 653 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 ADSLP30566 484 aaPredicted RBP13.14□□□□□ -0.31
SDC1-204ENST00000429035 EVI2BP34910 448 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 MC3RP41968 323 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 NCBP2P52298 156 aaKnown RBP eCLIP13.14□□□□□ -0.31
SDC1-204ENST00000429035 CLDN18P56856 261 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 MRPS22P82650 360 aaKnown RBP13.14□□□□□ -0.31
SDC1-204ENST00000429035 GAB1Q13480 694 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 CT45A2Q5DJT8 189 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 VWA1Q6PCB0 445 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 TMEM107Q6UX40 140 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 MMGT1Q8N4V1 131 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 GBP7Q8N8V2 638 aaPredicted RBP13.14□□□□□ -0.31
SDC1-204ENST00000429035 DSN1Q9H410 356 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 MIEF1Q9NQG6 463 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 TAS2R9Q9NYW1 312 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 C6orf203Q9P0P8 240 aaPredicted RBP13.14□□□□□ -0.31
SDC1-204ENST00000429035 NDRG3Q9UGV2 375 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 STK38LQ9Y2H1 464 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 NF1P21359 2839 aa13.14□□□□□ -0.31
SDC1-204ENST00000429035 A0A1W2PPR1 153 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 SLC22A20A6NK97 555 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 H3BML4 177 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 CRCPO75575 148 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 ANXA4P09525 319 aaPredicted RBP13.13□□□□□ -0.31
SDC1-204ENST00000429035 HOXB4P17483 251 aaPredicted RBP13.13□□□□□ -0.31
SDC1-204ENST00000429035 ATP5F1P24539 256 aaPredicted RBP13.13□□□□□ -0.31
SDC1-204ENST00000429035 ECHS1P30084 290 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 NTSP30990 170 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 MPIP34949 423 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 DSCR4P56555 118 aaPredicted RBP13.13□□□□□ -0.31
SDC1-204ENST00000429035 ZNF763Q0D2J5 394 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 C2orf80Q0P641 193 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 ADGRE4PQ86SQ3 457 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 SLC22A9Q8IVM8 553 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 MEIOBQ8N635 442 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 CCNYL1Q8N7R7 359 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 OR5M1Q8NGP8 315 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 ERP27Q96DN0 273 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 SMR3AQ99954 134 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 UBTD1Q9HAC8 227 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 MID1IP1Q9NPA3 183 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 DLL4Q9NR61 685 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 DDX18Q9NVP1 670 aaKnown RBP13.13□□□□□ -0.31
SDC1-204ENST00000429035 KLHL28Q9NXS3 571 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 FLRT3Q9NZU0 649 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 TESMINQ9Y4I5 508 aa13.13□□□□□ -0.31
SDC1-204ENST00000429035 POLR3HQ9Y535 204 aaPredicted RBP13.13□□□□□ -0.31
SDC1-204ENST00000429035 HEATR5AQ86XA9 2040 aa13.12□□□□□ -0.31
SDC1-204ENST00000429035 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms