RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 HSPB3Q12988 150 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 SLAMF1Q13291 335 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 KIR2DS3Q14952 304 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 TBR1Q16650 682 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 TOR1AIP1Q5JTV8 583 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 PERM1Q5SV97 790 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 NDUFAF5Q5TEU4 345 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 UBE2UQ5VVX9 321 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 ANKRD34AQ69YU3 496 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 LAIR2Q6ISS4 152 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 TUBA1AQ71U36 451 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 P2RY8Q86VZ1 359 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 ENTHD1Q8IYW4 607 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 SLC5A8Q8N695 610 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 HORMAD2Q8N7B1 307 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 LMNTD1Q8N9Z9 388 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 LINC01555Q8NAE3 123 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 ZSCAN1Q8NBB4 408 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 AVL9Q8NBF6 648 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 OR2L3Q8NG85 312 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 RHOXF1Q8NHV9 184 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 FAM81AQ8TBF8 368 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 SLC38A5Q8WUX1 472 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 LCN9Q8WX39 176 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 FKBP10Q96AY3 582 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 TMEM19Q96HH6 336 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 COPS4Q9BT78 406 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 SORBS1Q9BX66 1292 aaKnown RBP12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 WDR12Q9GZL7 423 aaKnown RBP12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 BCL2L10Q9HD36 194 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 HMG20AQ9NP66 347 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 ACER3Q9NUN7 267 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 POT1Q9NUX5 634 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 CNOT2Q9NZN8 540 aaKnown RBP12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 PHF11Q9UIL8 331 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 KCND3Q9UK17 655 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 LIPT1Q9Y234 373 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 PCDHGA6Q9Y5G7 932 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 PCDHGA10Q9Y5H3 936 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 ZNF780BQ9Y6R6 833 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 RNF215Q9Y6U7 377 aa12.09□□□□□ -0.47
SMARCB1-203ENST00000407082 HEATR5BQ9P2D3 2071 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 PRAMEF33A0A0G2JMD5 474 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 SH3PXD2BA1X283 911 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 GSAPA4D1B5 854 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 DUXAA6NLW8 204 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 TMEM229AB2RXF0 380 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 RTCAO00442 366 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ZW10O43264 779 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 EMC8O43402 210 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ERI3O43414 337 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ASNA1O43681 348 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 TMPRSS11DO60235 418 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 LCMT2O60294 686 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 PRAMEF10O60809 474 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 CNOT3O75175 753 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 H1F0P07305 194 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 FHP07954 510 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 CBLP22681 906 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 PSMB9P28065 219 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 PSMB5P28074 263 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 TLX1P31314 330 aaPredicted RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 IFNGR2P38484 337 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 OR1E2P47887 323 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 LIMS1P48059 325 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 NCBP2P52298 156 aaKnown RBP eCLIP12.08□□□□□ -0.483e-7■■□□□ 13.9
SMARCB1-203ENST00000407082 CRISP1P54107 249 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ZNF846Q147U1 533 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 LAPTM4AQ15012 233 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 TBCEQ15813 527 aaPredicted RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 FGD3Q5JSP0 725 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 MANEAQ5SRI9 462 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ATAD3BQ5T9A4 648 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 DUS1LQ6P1R4 473 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 TNFAIP8L2Q6P589 184 aaPredicted RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ABHD17CQ6PCB6 329 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 UBE3DQ7Z6J8 389 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 VASH2Q86V25 355 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 AMIGO1Q86WK6 493 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 RBM12BQ8IXT5 1001 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 STX19Q8N4C7 294 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ZNF655Q8N720 491 aaPredicted RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 SUN3Q8TAQ9 357 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 TBC1D15Q8TC07 691 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 NAT6Q93015 286 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 GAL3ST3Q96A11 431 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 MS4A6EQ96DS6 147 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 YIPF6Q96EC8 236 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 AMDHD1Q96NU7 426 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 COL21A1Q96P44 957 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ITPAQ9BY32 194 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 UCK2Q9BZX2 261 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 SLC25A18Q9H1K4 315 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 GLIPR2Q9H4G4 154 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ACOT13Q9NPJ3 140 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 SIRT3Q9NTG7 399 aaPredicted RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 ZCCHC3Q9NUD5 404 aaKnown RBP12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 TRPC4Q9UBN4 977 aa12.08□□□□□ -0.48
SMARCB1-203ENST00000407082 PSORS1C1Q9UIG5 152 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms