RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 DUX1O43812 170 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 TBX19O60806 448 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 GADD45GO95257 159 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 CSTAP01040 98 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 FABP3P05413 133 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 GLI1P08151 1106 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 FOLR3P41439 243 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 PTDSS1P48651 473 aaKnown RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF33BQ06732 778 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ITPRIPL2Q3MIP1 535 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 TMEM97Q5BJF2 176 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 PRAMEF20Q5VT98 475 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 WSCD1Q658N2 575 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 NEPROQ6NW34 567 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ANKRD16Q6P6B7 361 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 FAM43BQ6ZT52 329 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ADIPOR2Q86V24 386 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 MB21D2Q8IYB1 491 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF321PQ8N8H1 164 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 AGBL5Q8NDL9 886 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 RAB2BQ8WUD1 216 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 MAL2Q969L2 176 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF799Q96GE5 643 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 BOD1Q96IK1 185 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 MEGF10Q96KG7 1140 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 GPR20Q99678 358 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 WACQ9BTA9 647 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF629Q9UEG4 869 aaPredicted RBP4.43□□□□□ -1.7
SCN1A-202ENST00000375405 TSPAN16Q9UKR8 245 aa4.43□□□□□ -1.7
SCN1A-202ENST00000375405 TRGV8A0A0C4DH27 118 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ZCWPW2A0A1B0GU75 182 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 A0A1W2PQC6 194 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MEIS3P1A6NDR6 274 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SLC9B1P1A6NJY1 282 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TOX4O94842 621 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 FABP1P07148 127 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 GKN3PP0CG01 181 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 C8orf89P0DMQ9 161 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 GDF1P27539 372 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PTPN4P29074 926 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 STT3AP46977 705 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 AGTR2P50052 363 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PCBD1P61457 104 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SIM2Q14190 667 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TANGO2Q6ICL3 276 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MYO7BQ6PIF6 2116 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RBPMS2Q6ZRY4 209 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CATSPERDQ86XM0 798 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MARCH9Q86YJ5 346 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OR5M1Q8NGP8 315 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 BCL7CQ8WUZ0 217 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 HHIPQ96QV1 700 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 FAM103A1Q9BTL3 118 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 C20orf24Q9BUV8 137 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TXNIPQ9H3M7 391 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 WASH6PQ9NQA3 447 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PAK1IP1Q9NWT1 392 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RABL2AQ9UBK7 228 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RABL2BQ9UNT1 228 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 C15orf41Q9Y2V0 281 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 POMT1Q9Y6A1 747 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ABCC2Q92887 1545 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ZNF518AQ6AHZ1 1483 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 FAM166BA8MTA8 275 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PRAMEF26H0Y7S4 382 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TPP1O14773 563 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 H6PDO95479 791 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 F11P03951 625 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SHBGP04278 402 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 QDPRP09417 244 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 IL4RP24394 825 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 UBE2G1P62253 170 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SLC22A25Q6T423 547 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PLXDC2Q6UX71 529 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CD302Q8IX05 232 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 NRMQ8IXM6 262 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 ANKRD53Q8N9V6 530 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 NPEPL1Q8NDH3 523 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TTLQ8NG68 377 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SSC4DQ8WTU2 575 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OXNAD1Q96HP4 312 aaPredicted RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TIMM29Q9BSF4 260 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 MED18Q9BUE0 208 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 COPS3Q9UNS2 423 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RHBDD3Q9Y3P4 386 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CADP27708 2225 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 CPDO75976 1380 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 SYNMO15061 1565 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 A0A096LPI6 279 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 IGKV3D-11A0A0A0MRZ8 115 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 OR6C65A6NJZ3 312 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 H7C2G1 150 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 GOSR2O14653 212 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 F10P00742 488 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 IGKV3-11P04433 115 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 UBCP0CG48 685 aaKnown RBP4.42□□□□□ -1.7
SCN1A-202ENST00000375405 RPA2P15927 270 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 PRKCAP17252 672 aa4.42□□□□□ -1.7
SCN1A-202ENST00000375405 TFEBP19484 476 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms