RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 PSMA8Q8TAA3 256 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 FLVCR1-AS1Q8TAF5 88 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 CREB3L4Q8TEY5 395 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 WDR60Q8WVS4 1066 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 VPS33AQ96AX1 596 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 CCDC124Q96CT7 223 aaKnown RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 TGM7Q96PF1 710 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 GBP5Q96PP8 586 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 KCTD14Q9BQ13 255 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 FAIM2Q9BWQ8 316 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 ZNF717Q9BY31 904 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 KRTAP17-1Q9BYP8 105 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 TRIM8Q9BZR9 551 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 REXO4Q9GZR2 422 aaKnown RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 AKIRIN1Q9H9L7 192 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 NANOGQ9H9S0 305 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 S100A14Q9HCY8 104 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 SLC6A20Q9NP91 592 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 ACSS1Q9NUB1 689 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 ARMC1Q9NVT9 282 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 LYARQ9NX58 379 aaKnown RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 MS4A12Q9NXJ0 267 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 C5AR2Q9P296 337 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 ZNF282Q9UDV7 671 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 EPHA6Q9UF33 1036 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 POMT2Q9UKY4 750 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 PLAGL1Q9UM63 463 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 SH2B3Q9UQQ2 575 aa6.5□□□□□ -1.37
VPS13A-201ENST00000355766 KLF2Q9Y5W3 355 aaPredicted RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 CFAP20Q9Y6A4 193 aaKnown RBP6.5□□□□□ -1.37
VPS13A-201ENST00000355766 A0A0A6YYD5 115 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 A0A0J9YY10 115 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 LRIT2A6NDA9 550 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 SYNDIG1LA6NDD5 238 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 OR5K3A6NET4 321 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 A6NL46 340 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 EVPLLA8MZ36 301 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PLPP1O14494 284 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 RFXANKO14593 260 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 OR1F1O43749 312 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PEX1O43933 1283 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 SCN2BO60939 215 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 GMNNO75496 209 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PDE5AO76074 875 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 TBX6O95947 436 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 COX6B1P14854 86 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 UGT2B7P16662 529 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 GPX2P18283 190 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 HIST1H1TP22492 207 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PSMA4P25789 261 aaKnown RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 SLC7A1P30825 629 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 BSGP35613 385 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 FRKP42685 505 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 GSK3BP49841 420 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 MAPK12P53778 367 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 NME5P56597 212 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 FADDQ13158 208 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 TSTA3Q13630 321 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 RAPSNQ13702 412 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 CCNIQ14094 377 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 RBBP5Q15291 538 aaKnown RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 RUNDC3AQ59EK9 446 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PAGE3Q5JUK9 113 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 SLC35F1Q5T1Q4 408 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PWWP2BQ6NUJ5 590 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 ARMC6Q6NXE6 501 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 TRIM40Q6P9F5 258 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 ABHD17CQ6PCB6 329 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 FAM199XQ6PEV8 388 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 SLC2A7Q6PXP3 512 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 MED25Q71SY5 747 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 SLC30A8Q8IWU4 369 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 MMP21Q8N119 569 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 EID3Q8N140 333 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 CAMKVQ8NCB2 501 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 ADAMTS18Q8TE60 1221 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 NCLNQ969V3 563 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 MOAP1Q96BY2 351 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PPCDCQ96CD2 204 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 REXO5Q96IC2 774 aaKnown RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 CLPTM1LQ96KA5 538 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 LRGUKQ96M69 825 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 RNF145Q96MT1 663 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PRAP1Q96NZ9 151 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 FCRL4Q96PJ5 515 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 TSSK3Q96PN8 268 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 OR2A14Q96R47 310 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 CPPED1Q9BRF8 314 aaPredicted RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 DPH7Q9BTV6 452 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 DUSP26Q9BV47 211 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 ACAT2Q9BWD1 397 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 NLNQ9BYT8 704 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PAIP1Q9H074 479 aaKnown RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 SPNS1Q9H2V7 528 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 CDIP1Q9H305 208 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 KAT8Q9H7Z6 458 aaKnown RBP6.49□□□□□ -1.37
VPS13A-201ENST00000355766 GORASP2Q9H8Y8 452 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 PDE7BQ9NP56 450 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 MIEF1Q9NQG6 463 aa6.49□□□□□ -1.37
VPS13A-201ENST00000355766 AGPAT4Q9NRZ5 378 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms