RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CHD7Q9P2D1 2997 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 OTOFQ9HC10 1997 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 SLC16A5O15375 505 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 DOK2O60496 412 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 GCM2O75603 506 aaPredicted RBP11.25□□□□□ -0.61
USP1-201ENST00000339950 IL7P13232 177 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 CASP3P42574 277 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 ANXA11P50995 505 aaKnown RBP11.25□□□□□ -0.61
USP1-201ENST00000339950 CXCR4P61073 352 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 ZNF45Q02386 682 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 TBCEQ15813 527 aaPredicted RBP11.25□□□□□ -0.61
USP1-201ENST00000339950 OR4C11Q6IEV9 310 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 CNIH2Q6PI25 160 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 ESPNLQ6ZVH7 1005 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 ZNF547Q8IVP9 402 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 ANKK1Q8NFD2 765 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 LILRB4Q8NHJ6 448 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 CDS1Q92903 461 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 SNAPC3Q92966 411 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 MCCC1Q96RQ3 725 aaPredicted RBP11.25□□□□□ -0.61
USP1-201ENST00000339950 CPEB1Q9BZB8 566 aaKnown RBP11.25□□□□□ -0.61
USP1-201ENST00000339950 ATP13A2Q9NQ11 1180 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 SESN1Q9Y6P5 492 aa11.25□□□□□ -0.61
USP1-201ENST00000339950 A0A0B4J203 849 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 KMOO15229 486 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 CRYZL1O95825 349 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 IFNGR2P38484 337 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 P2RY2P41231 377 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 LGALS3BPQ08380 585 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 IRF5Q13568 498 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 ZNF181Q2M3W8 571 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 ZNF613Q6PF04 617 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 DNAJC5GQ8N7S2 189 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 MRPL43Q8N983 215 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 OR56A3Q8NH54 315 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 FGF13Q92913 245 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 MKRN2Q9H000 416 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 MED28Q9H204 178 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 MYEF2Q9P2K5 600 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 IKZF2Q9UKS7 526 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 EXO1Q9UQ84 846 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 HSPE1-MOB4S4R3N1 261 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 CHD5Q8TDI0 1954 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 GZMMP51124 257 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 STX4Q12846 297 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 PDGFRLQ15198 375 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 LCN1P1Q5VSP4 162 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 FAM71E1Q6IPT2 247 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 NUDT18Q6ZVK8 323 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 TRMT61AQ96FX7 289 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 CRELD1Q96HD1 420 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 SPATA5L1Q9BVQ7 753 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 IL21RQ9HBE5 538 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 EIF3KQ9UBQ5 218 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 TRIM64A6NGJ6 449 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 KHNYNO15037 678 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 KIAA0355O15063 1070 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 OR2B3O76000 313 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 ITPKBP27987 946 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 CRYBA2P53672 197 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 FBXW4P57775 412 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 CDK3Q00526 305 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 FAAH2Q6GMR7 532 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 METTL2BQ6P1Q9 378 aaKnown RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 PNCKQ6P2M8 343 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 ZNF367Q7RTV3 350 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 PRICKLE2Q7Z3G6 844 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 NLRP8Q86W28 1048 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 FBXO15Q8NCQ5 510 aaPredicted RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 GPR32P1Q8NGA4 272 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 OR4K13Q8NH42 304 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 SPRYD4Q8WW59 207 aaPredicted RBP11.24□□□□□ -0.61
USP1-201ENST00000339950 OTUB2Q96DC9 234 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 SPACA7Q96KW9 195 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 SLC7A7Q9UM01 511 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 MGAT4BQ9UQ53 548 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 GRIP1Q9Y3R0 1128 aa11.24□□□□□ -0.61
USP1-201ENST00000339950 EDDM13A0A1B0GTR0 161 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 MEIOCA2RUB1 952 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 LRRN3E7EW58 273 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 BLOC1S5-TXNDC5H3BN57 136 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 KDM4BO94953 1096 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 FBXO45P0C2W1 286 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 CTSEP14091 401 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 MAOBP27338 520 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 TLX1P31314 330 aaPredicted RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 TGFBR2P37173 567 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 PSMB10P40306 273 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 KHKP50053 298 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 AP2S1P53680 142 aaPredicted RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 HNRNPA1L2Q32P51 320 aaKnown RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 FBXO43Q4G163 708 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 PRRT3Q5FWE3 981 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 FAM78AQ5JUQ0 283 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 PRPF38BQ5VTL8 546 aaKnown RBP11.23□□□□□ -0.61
USP1-201ENST00000339950 TANGO2Q6ICL3 276 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 CHMP1BQ7LBR1 199 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 TMC8Q8IU68 726 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 CPXM2Q8N436 756 aa11.23□□□□□ -0.61
USP1-201ENST00000339950 SLC37A3Q8NCC5 494 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms