RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DBX2Q6ZNG2 339 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 ASRGL1Q7L266 308 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 LRRC25Q8N386 305 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 MYO5BQ9ULV0 1848 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 DDTLA6NHG4 134 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 TBX10O75333 385 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 ACY1Q03154 408 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 JOSD2Q8TAC2 188 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 MSLNLQ96KJ4 702 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 OR11A1Q9GZK7 315 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 UPK3BL1B0FP48 263 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 UPK3BL2E5RIL1 263 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 DVL2O14641 736 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 DPM1O60762 260 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 ADAMTS4O75173 837 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 TK1P04183 234 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 TP53P04637 393 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 IL32P24001 234 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM31Q5JXX7 168 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 TOMM40LQ969M1 308 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 FUBP3Q96I24 572 aaKnown RBP eCLIP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 NIPSNAP3BQ9BS92 247 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 ABCC3O15438 1527 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 ADAMTS13Q76LX8 1427 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 MANBAO00462 879 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 CLCNKBP51801 687 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 SLC18A1P54219 525 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 GALEQ14376 348 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 GPR176Q14439 515 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 CATSPEREQ5SY80 951 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 ARL14EPQ8N8R7 260 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 CWH43Q9H720 699 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 RFC3P40938 356 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 PLEKHS1Q5SXH7 462 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 DRAXINQ8NBI3 349 aaPredicted RBP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 UQCC2Q9BRT2 126 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 RBCK1Q9BYM8 510 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 RPH3ALQ9UNE2 315 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 A0A096LPI6 279 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 IMPA1P29218 277 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 MTNR1AP48039 350 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 NOXA1Q86UR1 476 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 CELF5Q8N6W0 485 aaKnown RBP13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 ITPKCQ96DU7 683 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 EMC8O43402 210 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 RAB3DO95716 219 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 SYPP08247 313 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 OR12D1P0DN82 309 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 NOGQ13253 232 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 TSSK4Q6SA08 328 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 NETO2Q8NC67 525 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 PLPP5Q8NEB5 264 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 TMPRSS5Q9H3S3 457 aa13.28□□□□□ -0.28
CCDC88A-201ENST00000263630 CRYM-AS1A6NIL9 109 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 FABP1P07148 127 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 C8AP07357 584 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 CRABP1P29762 137 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 PRDX3P30048 256 aaKnown RBP13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 UFM1P61960 85 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 TGFBR3Q03167 851 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 HACD4Q5VWC8 232 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 ARSGQ96EG1 525 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 SEZ6LQ9BYH1 1024 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 MFFQ9GZY8 342 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 ALKQ9UM73 1620 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 ARAFP10398 606 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 ELK4P28324 431 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 ADARB1P78563 741 aaKnown RBP13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 FNDC8Q8TC99 324 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 SGIP1Q9BQI5 828 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 PPT1P50897 306 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 APOFQ13790 326 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 VGLL4Q14135 290 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 TMEM201Q5SNT2 666 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 OR4F6Q8NGB9 312 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 DLGAP4Q9Y2H0 992 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 SETBP1Q9Y6X0 1596 aa13.27□□□□□ -0.28
CCDC88A-201ENST00000263630 LDB2O43679 373 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 DUX1O43812 170 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 C8orf89P0DMQ9 161 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 HEPHL1Q6MZM0 1159 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 ANKRD9Q96BM1 317 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 MGLLQ99685 303 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 ATF6BQ99941 703 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 ISYNA1Q9NPH2 558 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 STXBP5LQ9Y2K9 1186 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 HOXA1P49639 335 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 MEP1BQ16820 701 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 CILP2Q8IUL8 1156 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 KDF1Q8NAX2 398 aaPredicted RBP13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 STEAP2Q8NFT2 490 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 ABHD11Q8NFV4 315 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 FBXL20Q96IG2 436 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 SIDT1Q9NXL6 827 aaKnown RBP13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 A6NIZ1 184 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 OR5K4A6NMS3 321 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 WNT10BO00744 389 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 HBQ1P09105 142 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 GLB1P16278 677 aa13.27□□□□□ -0.29
CCDC88A-201ENST00000263630 RAP1BP61224 184 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms