RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 FBRSQ9HAH7 460 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 TBC1D23Q9NUY8 699 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 FBXO34Q9NWN3 711 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 PCOLCE2Q9UKZ9 415 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 GPR52Q9Y2T5 361 aa9.96□□□□□ -0.82
CUX1-221ENST00000622516 FAAHO00519 579 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 ADAP00813 363 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 THEGLP0DJG4 465 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 DBTP11182 482 aaKnown RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 MAOBP27338 520 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 KIR2DS3Q14952 304 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 GPR68Q15743 365 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 EOGTQ5NDL2 527 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 ACSM5Q6NUN0 579 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 TMEM64Q6YI46 380 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 LRRC25Q8N386 305 aaPredicted RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 OR4K14Q8NGD5 310 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 WDR36Q8NI36 951 aaKnown RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 RASSF5Q8WWW0 418 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 PIK3R3Q92569 461 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SLC38A4Q969I6 547 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SLC22A18Q96BI1 424 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 ZNF764Q96H86 408 aaPredicted RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 DSN1Q9H410 356 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 RERGLQ9H628 205 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 FAM60AQ9NP50 221 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 PLCXD1Q9NUJ7 323 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 CLN6Q9NWW5 311 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 MMP17Q9ULZ9 603 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 DAPP1Q9UN19 280 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 DSPPQ9NZW4 1301 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SYNDIG1LA6NDD5 238 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 B4DGG1 531 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SGK494L7N484 410 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SLC22A1O15245 554 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 PRKYO43930 277 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 CDC123O75794 336 aaPredicted RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 TP53P04637 393 aaPredicted RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 HOXD11P31277 338 aaPredicted RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 SOX18P35713 384 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SHC2P98077 582 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 TNFRSF17Q02223 184 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 ALDH6A1Q02252 535 aaKnown RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 EIF2B5Q13144 721 aaKnown RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 SUZ12Q15022 739 aaKnown RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 DUSP5Q16690 384 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 PERM1Q5SV97 790 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 CASP12Q6UXS9 341 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 PRICKLE2Q7Z3G6 844 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 IGFN1Q86VF2 1251 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 BBS10Q8TAM1 723 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 DYNC2LI1Q8TCX1 351 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SLC7A5P2Q9GIP4 190 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 DCSTAMPQ9H295 470 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SEMA4GQ9NTN9 838 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 FKBP14Q9NWM8 211 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 TRNAU1APQ9NX07 287 aaKnown RBP9.95□□□□□ -0.82
CUX1-221ENST00000622516 ZSCAN32Q9NX65 697 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 GIN1Q9NXP7 522 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 SLC13A4Q9UKG4 626 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 ACAD8Q9UKU7 415 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 CLCA2Q9UQC9 943 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 MTCH2Q9Y6C9 303 aa9.95□□□□□ -0.82
CUX1-221ENST00000622516 A0A087WUU8 490 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 PNMA8CA0A1B0GUJ8 204 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 B3GALT2O43825 422 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 FGF17O60258 216 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 CH25HO95992 272 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 TNFP01375 233 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 ALPPP05187 535 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 HOXC4P09017 264 aaPredicted RBP9.94□□□□□ -0.82
CUX1-221ENST00000622516 CTSEP14091 401 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 CSNK2BP67870 215 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 ILKQ13418 452 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 GINS1Q14691 196 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 EXOSC7Q15024 291 aaKnown RBP9.94□□□□□ -0.82
CUX1-221ENST00000622516 NKAIN4Q8IVV8 208 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 MORN4Q8NDC4 146 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 RERGQ96A58 199 aaPredicted RBP9.94□□□□□ -0.82
CUX1-221ENST00000622516 TM4SF19Q96DZ7 209 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 FAM46AQ96IP4 442 aaKnown RBP9.94□□□□□ -0.82
CUX1-221ENST00000622516 ZFYVE21Q9BQ24 234 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 BCL2L10Q9HD36 194 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 MGAT4BQ9UQ53 548 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 A0A0G2JPF8 293 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 A0A1W2PRQ8 180 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 A8MVJ9 347 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 HNRNPCL2B2RXH8 293 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 HNRNPCL3B7ZW38 293 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 WWP2O00308 870 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 HNRNPCL4P0DMR1 293 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 ALOX12P18054 663 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 SOX3P41225 446 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 TBCEQ15813 527 aaPredicted RBP9.94□□□□□ -0.82
CUX1-221ENST00000622516 TSTQ16762 297 aaKnown RBP9.94□□□□□ -0.82
CUX1-221ENST00000622516 INAVAQ3KP66 663 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 KIF18BQ86Y91 864 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 PEX5LQ8IYB4 626 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 SLC34A3Q8N130 599 aa9.94□□□□□ -0.82
CUX1-221ENST00000622516 OR52P1PQ8NH57 321 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 161.7 ms