RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 KCNH1O95259 989 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 ANP32DO95626 131 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 KRT16P08779 473 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 CHI3L1P36222 383 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-211ENST00000618700 SSR4P51571 173 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 PSPHP78330 225 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 STX5Q13190 355 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 ZNHIT3Q15649 155 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-211ENST00000618700 CDC73Q6P1J9 531 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 PCSK4Q6UW60 755 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 IGFL3Q6UXB1 125 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 WDR53Q7Z5U6 358 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-211ENST00000618700 DHDDSQ86SQ9 333 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 FITM2Q8N6M3 262 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 EXD3Q8N9H8 876 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 SLC16A11Q8NCK7 471 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 SLC22A8Q8TCC7 542 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 HSPBAP1Q96EW2 488 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 AURKBQ96GD4 344 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-211ENST00000618700 SLC35G5Q96KT7 338 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 ACTRT3Q9BYD9 372 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 TRIM45Q9H8W5 580 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-211ENST00000618700 GIN1Q9NXP7 522 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 VAPAQ9P0L0 249 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 ABI3Q9P2A4 366 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 FAF1Q9UNN5 650 aaPredicted RBP18.2■□□□□ 0.5
UPF3A-211ENST00000618700 TP53TG5Q9Y2B4 290 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 ZNF451Q9Y4E5 1061 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 GMEB1Q9Y692 573 aa18.2■□□□□ 0.5
UPF3A-211ENST00000618700 MRASO14807 208 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 WDPCPO95876 746 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 SOX3P41225 446 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 MVDP53602 400 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 RPS26P62854 115 aaKnown RBP18.19■□□□□ 0.5
UPF3A-211ENST00000618700 DUSP5Q16690 384 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 TRMT5Q32P41 509 aaKnown RBP18.19■□□□□ 0.5
UPF3A-211ENST00000618700 SWT1Q5T5J6 900 aaKnown RBP18.19■□□□□ 0.5
UPF3A-211ENST00000618700 ZNF468Q5VIY5 522 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-211ENST00000618700 SLC44A2Q8IWA5 706 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-211ENST00000618700 TAGAPQ8N103 731 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 C9orf43Q8TAL5 461 aaPredicted RBP18.19■□□□□ 0.5
UPF3A-211ENST00000618700 FBXO30Q8TB52 745 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 SLC9A6Q92581 669 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 RCN3Q96D15 328 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 CMTM5Q96DZ9 223 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 STACQ99469 402 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 YIPF4Q9BSR8 244 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 TPT1P8Q9HAU6 139 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 Q9N2J8 555 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 DUSP22Q9NRW4 184 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 CHD6Q8TD26 2715 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 FAM208BQ5VWN6 2430 aa18.19■□□□□ 0.5
UPF3A-211ENST00000618700 FXYD1O00168 92 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 OR6B1O95007 311 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 KRT75O95678 551 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 ALOX5P09917 674 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 FBXO45P0C2W1 286 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 ABCD3P28288 659 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 MAGEA8P43361 318 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 ST13P50502 369 aaKnown RBP18.18■□□□□ 0.5
UPF3A-211ENST00000618700 HLCSP50747 726 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 NRG3P56975 720 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 TUBA3CQ13748 450 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 NFYCQ13952 458 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 ZNF791Q3KP31 576 aaPredicted RBP18.18■□□□□ 0.5
UPF3A-211ENST00000618700 MMEL1Q495T6 779 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 TUBA3EQ6PEY2 450 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 OPN5Q6U736 354 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 GPALPP1Q8IXQ4 340 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 TM9SF4Q92544 642 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 JADE3Q92613 823 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 HAS2Q92819 552 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 OTUB1Q96FW1 271 aaPredicted RBP18.18■□□□□ 0.5
UPF3A-211ENST00000618700 WBP1Q96G27 269 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 OR7D2Q96RA2 312 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 CGREF1Q99674 301 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 CPPED1Q9BRF8 314 aaPredicted RBP18.18■□□□□ 0.5
UPF3A-211ENST00000618700 PIGUQ9H490 435 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 NPFFR2Q9Y5X5 522 aa18.18■□□□□ 0.5
UPF3A-211ENST00000618700 BOD1L1Q8NFC6 3051 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 TLN1Q9Y490 2541 aaKnown RBP18.17■□□□□ 0.5
UPF3A-211ENST00000618700 TNRC6AQ8NDV7 1962 aaKnown RBP18.17■□□□□ 0.5
UPF3A-211ENST00000618700 OR5H15A6NDH6 313 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 ASNA1O43681 348 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 UNC5CO95185 931 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 MATN1P21941 496 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 GABRA3P34903 492 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 KHKP50053 298 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 TXNL4AP83876 142 aaKnown RBP18.17■□□□□ 0.5
UPF3A-211ENST00000618700 CYP27C1Q4G0S4 372 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 RNF130Q86XS8 419 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 HPS6Q86YV9 775 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 PRR22Q8IZ63 422 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 SLC34A3Q8N130 599 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 TMEM156Q8N614 296 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 PCYOX1LQ8NBM8 494 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 OR4N2Q8NGD1 307 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 OR52N2Q8NGI0 321 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 OR5D16Q8NGK9 328 aa18.17■□□□□ 0.5
UPF3A-211ENST00000618700 PNPT1Q8TCS8 783 aaKnown RBP18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms