RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 ANKRD13BQ86YJ7 626 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 C19orf47Q8N9M1 422 aaKnown RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 MORN4Q8NDC4 146 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 OR4K5Q8NGD3 323 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 PRRC1Q96M27 445 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 GPN2Q9H9Y4 310 aaPredicted RBP13.52□□□□□ -0.24
VRK3-217ENST00000599538 TIMMDC1Q9NPL8 285 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 TAS2R16Q9NYV7 291 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 MGAT4BQ9UQ53 548 aa13.52□□□□□ -0.24
VRK3-217ENST00000599538 OR2W5A6NFC9 320 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 CPSF4LA6NMK7 179 aaKnown RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 CASC3O15234 703 aaKnown RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 OXSR1O95747 527 aaPredicted RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 NME1P15531 152 aaKnown RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 NT5EP21589 574 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 AVPR1BP47901 424 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 ENTPD1P49961 510 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 ATAD3BQ5T9A4 648 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 PRAMEF8Q5VWM4 474 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 PRAMEF7Q5VXH5 474 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 TYW3Q6IPR3 259 aaKnown RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 DHRS4L2Q6PKH6 230 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 BCDIN3DQ7Z5W3 292 aaKnown RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 CACTIN-AS1Q8N1I8 211 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 DEPDC4Q8N2C3 294 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 IQCF1Q8N6M8 205 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 OR52P1PQ8NH57 321 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 IPCEF1Q8WWN9 437 aaPredicted RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 PIK3R3Q92569 461 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 ANKRD9Q96BM1 317 aaPredicted RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 YIPF6Q96EC8 236 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 POLR2J3Q9H1A7 115 aaKnown RBP13.52□□□□□ -0.25
VRK3-217ENST00000599538 CCNB1IP1Q9NPC3 277 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.52□□□□□ -0.25
VRK3-217ENST00000599538 LIPT1Q9Y234 373 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 ASXL3Q9C0F0 2248 aa13.52□□□□□ -0.25
VRK3-217ENST00000599538 TMEM131Q92545 1883 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 A0A087WUU8 490 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 A0A0A6YYC8 382 aaPredicted RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 H3BN98 237 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 I3L1I5 382 aaPredicted RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 TLR4O00206 839 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 GPR75O95800 540 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 ATP1B1P05026 303 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 TNNI3P19429 210 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 TGFBR1P36897 503 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 UGT2B15P54855 530 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 MGAT2Q10469 447 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 ILKQ13418 452 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 PRICKLE4Q2TBC4 344 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 DEFB133Q30KQ1 61 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 INAVAQ3KP66 663 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 PTCHD4Q6ZW05 846 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 MCATQ8IVS2 390 aaKnown RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 ZNF655Q8N720 491 aaPredicted RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 B3GNT7Q8NFL0 401 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 TBC1D15Q8TC07 691 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 ARHGDIGQ99819 225 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 SEMA4GQ9NTN9 838 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 PTGFRNQ9P2B2 879 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 C19orf53Q9UNZ5 99 aaPredicted RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 NPIPA5A0A0B4J1W7 369 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 NPIPA7E9PJI5 369 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 CHST10O43529 356 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 THY1P04216 161 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 CDK1P06493 297 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 NPIPA8P0DM63 369 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 ATXN8OSP0DMR3 200 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 PTNP21246 168 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 NUDT1P36639 197 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 GFERP55789 205 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 CDC42P60953 191 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 RPL6Q02878 288 aaKnown RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 DOC2BQ14184 412 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 MAPK14Q16539 360 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 SYT16Q17RD7 645 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 PUS10Q3MIT2 529 aaKnown RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 MANEAQ5SRI9 462 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 SAMD14Q8IZD0 417 aaPredicted RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 SIX5Q8N196 739 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 SVOPQ8N4V2 548 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 RPL3LQ92901 407 aaKnown RBP13.51□□□□□ -0.25
VRK3-217ENST00000599538 HLA-CQ95604 372 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 ARSGQ96EG1 525 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 HSPA12BQ96MM6 686 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 SDF2Q99470 211 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 UCKL1Q9NWZ5 548 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 MAT2BQ9NZL9 334 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 CLCA2Q9UQC9 943 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 WDR45Q9Y484 360 aa13.51□□□□□ -0.25
VRK3-217ENST00000599538 DUXAA6NLW8 204 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 TGFBR3LH3BV60 316 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 M0R082 166 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 CDC123O75794 336 aaPredicted RBP13.5□□□□□ -0.25
VRK3-217ENST00000599538 TGFBR2P37173 567 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 FASLGP48023 281 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 EMP3P54852 163 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 SMIM11AP58511 58 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 CSNK2BP67870 215 aa13.5□□□□□ -0.25
VRK3-217ENST00000599538 MAT1AQ00266 395 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms