RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 SCARB2Q14108 478 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 DUSP5Q16690 384 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 BTBD16Q32M84 506 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 CRTC2Q53ET0 693 aaPredicted RBP9.96□□□□□ -0.81
SS18-213ENST00000579640 HEPHL1Q6MZM0 1159 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 ERMP1Q7Z2K6 904 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 C16orf62Q7Z3J2 963 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 C9orf40Q8IXQ3 194 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 COX18Q8N8Q8 333 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 FAM156AQ8NDB6 213 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 HIPK4Q8NE63 616 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 SNIP1Q8TAD8 396 aaKnown RBP9.96□□□□□ -0.81
SS18-213ENST00000579640 FBXO30Q8TB52 745 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 GPR151Q8TDV0 419 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 ELP5Q8TE02 316 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 KCNE4Q8WWG9 221 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 RAB8BQ92930 207 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 TP53INP1Q96A56 240 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 SLC35A4Q96G79 324 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 LCORQ96JN0 433 aaPredicted RBP9.96□□□□□ -0.81
SS18-213ENST00000579640 BTBD2Q9BX70 525 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 ITPAQ9BY32 194 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 TRIM15Q9C019 465 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 WWTR1Q9GZV5 400 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 POMPQ9Y244 141 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 GPR55Q9Y2T6 319 aaPredicted RBP9.96□□□□□ -0.81
SS18-213ENST00000579640 SNX13Q9Y5W8 968 aa9.96□□□□□ -0.81
SS18-213ENST00000579640 MRPS18BQ9Y676 258 aaKnown RBP9.96□□□□□ -0.81
SS18-213ENST00000579640 TRBV11-1A0A0K0K1C0 115 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 FRG2CA6NGY1 282 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 A8MVJ9 347 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 ACOX3O15254 700 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 GUSBP08236 651 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 NR2F1P10589 423 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 GGT1P19440 569 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 GABRA3P34903 492 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 CRISP3P54108 245 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 POU6F2P78424 691 aaPredicted RBP9.96□□□□□ -0.82
SS18-213ENST00000579640 HPCAP84074 193 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 ARHGAP11BQ3KRB8 267 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 CYP27C1Q4G0S4 372 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 REEP3Q6NUK4 255 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 ZNF441Q8N8Z8 693 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 CHDHQ8NE62 594 aaPredicted RBP9.96□□□□□ -0.82
SS18-213ENST00000579640 SLC38A5Q8WUX1 472 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 CDS1Q92903 461 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 POP5Q969H6 163 aaKnown RBP9.96□□□□□ -0.82
SS18-213ENST00000579640 ADIPOR1Q96A54 375 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 HSPBAP1Q96EW2 488 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 TRNT1Q96Q11 434 aaKnown RBP9.96□□□□□ -0.82
SS18-213ENST00000579640 DEFB126Q9BYW3 111 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 DPH1Q9BZG8 443 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 GORASP2Q9H8Y8 452 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 POLE3Q9NRF9 147 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 ACTR3BQ9P1U1 418 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 GMPR2Q9P2T1 348 aaKnown RBP9.96□□□□□ -0.82
SS18-213ENST00000579640 ZNF223Q9UK11 482 aaPredicted RBP9.96□□□□□ -0.82
SS18-213ENST00000579640 FBXL4Q9UKA2 621 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 MRTO4Q9UKD2 239 aaKnown RBP9.96□□□□□ -0.82
SS18-213ENST00000579640 DTX4Q9Y2E6 619 aa9.96□□□□□ -0.82
SS18-213ENST00000579640 ZNF891A8MT65 544 aaPredicted RBP9.95□□□□□ -0.82
SS18-213ENST00000579640 ANKRD65E5RJM6 399 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 CXCR6O00574 342 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 ACOT8O14734 319 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 ARPC2O15144 300 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 TO15178 435 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 SLC28A2O43868 658 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 NME6O75414 186 aaPredicted RBP9.95□□□□□ -0.82
SS18-213ENST00000579640 PDE9AO76083 593 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 SORBS2O94875 1100 aaKnown RBP9.95□□□□□ -0.82
SS18-213ENST00000579640 BCHEP06276 602 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 CT45A8P0DMV1 189 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 CT45A9P0DMV2 189 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 CT45A2Q5DJT8 189 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 MTX3Q5HYI7 312 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 C1orf146Q5VVC0 180 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 GLYATQ6IB77 296 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 LCN8Q6JVE9 175 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 NPSR1Q6W5P4 371 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 LRRC74BQ6ZQY2 392 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 CCDC80Q76M96 950 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 WDR53Q7Z5U6 358 aaPredicted RBP9.95□□□□□ -0.82
SS18-213ENST00000579640 PATL1Q86TB9 770 aaKnown RBP9.95□□□□□ -0.82
SS18-213ENST00000579640 VASH2Q86V25 355 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 DHFR2Q86XF0 187 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 SLC44A2Q8IWA5 706 aaPredicted RBP9.95□□□□□ -0.82
SS18-213ENST00000579640 FAM13CQ8NE31 585 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 OR52E4Q8NGH9 312 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 NFKBIDQ8NI38 313 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 BBS10Q8TAM1 723 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 THAP4Q8WY91 577 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 PMM1Q92871 262 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 MAL2Q969L2 176 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 OTUB1Q96FW1 271 aaPredicted RBP9.95□□□□□ -0.82
SS18-213ENST00000579640 TMEM19Q96HH6 336 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 FER1L6-AS2Q96M78 137 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 GAL3ST4Q96RP7 486 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 PCDHAC1Q9H158 963 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 ZNF160Q9HCG1 818 aa9.95□□□□□ -0.82
SS18-213ENST00000579640 BCL2L10Q9HD36 194 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms