RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 LRRN1Q6UXK5 716 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 Q6ZNB5 142 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 NLRC3Q7RTR2 1065 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-212ENST00000574799 KLBQ86Z14 1044 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 OR52I1Q8NGK6 324 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 NTMT1Q9BV86 223 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 CACYBPQ9HB71 228 aaKnown RBP9.05□□□□□ -0.96
CCDC40-212ENST00000574799 ACER3Q9NUN7 267 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 STON1Q9Y6Q2 735 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 MUC3AQ02505 3323 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 PLXNA2O75051 1894 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 C2orf16Q68DN1 1984 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 GPR171O14626 319 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 SPDEFO95238 335 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 MPC2O95563 127 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 URODP06132 367 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 BCHEP06276 602 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 IRF1P10914 325 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 CCL5P13501 91 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 ITGB7P26010 798 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 CDH11P55287 796 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 CNTN1Q12860 1018 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 FAM180BQ6P0A1 224 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 LINGO2Q7L985 606 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 DGLUCYQ7Z3D6 616 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 IZUMO1Q8IYV9 350 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 LINC00469Q8N7U9 141 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 CLRN3Q8NCR9 226 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 C2orf15Q8WU43 125 aaKnown RBP9.05□□□□□ -0.96
CCDC40-212ENST00000574799 TRIM43Q96BQ3 446 aaPredicted RBP9.05□□□□□ -0.96
CCDC40-212ENST00000574799 ZC3HAV1LQ96H79 300 aaKnown RBP9.05□□□□□ -0.96
CCDC40-212ENST00000574799 CXorf58Q96LI9 332 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 SECISBP2Q96T21 854 aaKnown RBP9.05□□□□□ -0.96
CCDC40-212ENST00000574799 LINC00597Q9H2U6 94 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 CCL27Q9Y4X3 112 aa9.05□□□□□ -0.96
CCDC40-212ENST00000574799 TRAV20A0A0B4J274 112 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 UBE2QL1A1L167 161 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 DISC1C4P0D8 188 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 LDOC1O95751 146 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 WDPCPO95876 746 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 CBX7O95931 251 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 RLN1P04808 185 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 ADRA2AP08913 450 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 PIPP12273 146 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 PVALBP20472 110 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 MTNR1AP48039 350 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 RPS26P62854 115 aaKnown RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 BAMBIQ13145 260 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 INSL4Q14641 139 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 CCDC157Q569K6 752 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 CXXC5Q7LFL8 322 aaKnown RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 SLC39A11Q8N1S5 342 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 KLHL36Q8N4N3 616 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 CHCHD4Q8N4Q1 142 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 HMGB4Q8WW32 186 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 LMLNQ96KR4 655 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 TSNAXQ99598 290 aaKnown RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 PDCD10Q9BUL8 212 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 TEX10Q9NXF1 929 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 ASB4Q9Y574 426 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 KIAA1549LQ6ZVL6 1849 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 KIF26AQ9ULI4 1882 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 IRGMA1A4Y4 181 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GABRPO00591 440 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 SGCEO43556 437 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 SMIM11AP58511 58 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GAB1Q13480 694 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 CAMK1Q14012 370 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 HMGN2P46Q86SG4 172 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GPR135Q8IZ08 494 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 ING5Q8WYH8 240 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 RAB8BQ92930 207 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 FAM193BQ96PV7 902 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 TMEM121BQ9BXQ6 578 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 ZFP64Q9NPA5 681 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 SPATA6Q9NWH7 488 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 SAGE1Q9NXZ1 904 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 EMC3Q9P0I2 261 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 RASD1Q9Y272 281 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GAPDHSO14556 408 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 KHNYNO15037 678 aaKnown RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 SIGLEC5O15389 551 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 PRKYO43930 277 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 STX11O75558 287 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 APOC1P02654 83 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GLAP06280 429 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 S100A6P06703 90 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GABRA5P31644 462 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GKP32189 559 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 GMFBP60983 142 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 WDR5P61964 334 aaKnown RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 OC90Q02509 493 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 TLE2Q04725 743 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 SIGLEC14Q08ET2 396 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 RIN1Q13671 783 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 RPS26P11Q5JNZ5 115 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 RETSATQ6NUM9 610 aa9.04□□□□□ -0.96
CCDC40-212ENST00000574799 KIAA0907Q7Z7F0 614 aaPredicted RBP9.04□□□□□ -0.96
CCDC40-212ENST00000574799 OXR1Q8N573 874 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms