RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 C1QTNF3Q9BXJ4 246 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 BEX4Q9NWD9 120 aaPredicted RBP19.12■□□□□ 0.65
VPS53-216ENST00000574029 NMRK1Q9NWW6 199 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 TAS2R10Q9NYW0 307 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 ZNF225Q9UK10 706 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 MRPS18CQ9Y3D5 142 aaKnown RBP19.12■□□□□ 0.65
VPS53-216ENST00000574029 NIPBLQ6KC79 2804 aaeCLIP19.12■□□□□ 0.65
VPS53-216ENST00000574029 MED12LQ86YW9 2145 aa19.12■□□□□ 0.65
VPS53-216ENST00000574029 A8MXE2 369 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 ABCB7O75027 752 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 BCAS2O75934 225 aaPredicted RBP19.11■□□□□ 0.65
VPS53-216ENST00000574029 INHBAP08476 426 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 ZNF708P17019 499 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 CPA2P48052 419 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 ALDH9A1P49189 494 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 CDH13P55290 713 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 POU4F3Q15319 338 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 ZNF628Q5EBL2 1059 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 AAGABQ6PD74 315 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 GCNT2Q8N0V5 402 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 C18orf12Q96KH6 178 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 BTBD9Q96Q07 612 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 MRPL57Q9BQC6 102 aaKnown RBP19.11■□□□□ 0.65
VPS53-216ENST00000574029 HEY2Q9UBP5 337 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 TRPS1Q9UHF7 1281 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 FBXL2Q9UKC9 423 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 UTS2RQ9UKP6 389 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 WIF1Q9Y5W5 379 aa19.11■□□□□ 0.65
VPS53-216ENST00000574029 FLNAP21333 2647 aaKnown RBP19.1■□□□□ 0.65
VPS53-216ENST00000574029 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 PLOD2O00469 737 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 HCRTR2O43614 444 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 TSPAN2O60636 221 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 REM1O75628 298 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 TNFSF13O75888 250 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 SBK3P0C264 359 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 CT45A8P0DMV1 189 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 CT45A9P0DMV2 189 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 TSPAN8P19075 237 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 SERPINB9P50453 376 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 CLDN18P56856 261 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 CT45A2Q5DJT8 189 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 FAM219BQ5XKK7 198 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 TMEM151AQ8N4L1 468 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 RNF138Q8WVD3 245 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 ERP27Q96DN0 273 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 DTNBP1Q96EV8 351 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 MRPL46Q9H2W6 279 aaKnown RBP19.1■□□□□ 0.65
VPS53-216ENST00000574029 ANKRA2Q9H9E1 313 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 VPS29Q9UBQ0 182 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 PACSIN3Q9UKS6 424 aa19.1■□□□□ 0.65
VPS53-216ENST00000574029 A8MT66 165 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 OR4F21O95013 312 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 DIO3P55073 304 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 EFR3AQ14156 821 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 CXorf67Q86X51 503 aaPredicted RBP19.09■□□□□ 0.65
VPS53-216ENST00000574029 CCDC116Q8IYX3 515 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 VSTM2LQ96N03 204 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 SFXN2Q96NB2 322 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 ADOQ96SZ5 270 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 HBEGFQ99075 208 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 PAFAH2Q99487 392 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 SMR3AQ99954 134 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 TSPYL1Q9H0U9 437 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 NDRG3Q9UGV2 375 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 MCM8Q9UJA3 840 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 DLGAP4Q9Y2H0 992 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 TESMINQ9Y4I5 508 aa19.09■□□□□ 0.65
VPS53-216ENST00000574029 A0A1W2PNV4 684 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 B4DXG7 233 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 CASKO14936 926 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 ZIC3O60481 467 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 TGM6O95932 706 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 HSD3B1P14060 373 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 HSD3B2P26439 372 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 HSD17B3P37058 310 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 PCYT1AP49585 367 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 GAS1P54826 345 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 CORO7P57737 925 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 PSPHP78330 225 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 NKX6-1P78426 367 aaPredicted RBP19.08■□□□□ 0.64
VPS53-216ENST00000574029 LTBQ06643 244 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 BCL2A1Q16548 175 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 SHEQ5VZ18 495 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 NPSR1Q6W5P4 371 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 TAOK1Q7L7X3 1001 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 GRAMD2AQ8IUY3 354 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 GBP7Q8N8V2 638 aaPredicted RBP19.08■□□□□ 0.64
VPS53-216ENST00000574029 CDC42EP4Q9H3Q1 356 aaKnown RBP19.08■□□□□ 0.64
VPS53-216ENST00000574029 L2HGDHQ9H9P8 463 aa19.08■□□□□ 0.64
VPS53-216ENST00000574029 NAV3Q8IVL0 2385 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 VPS13CQ709C8 3753 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 MANBAO00462 879 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 MSTNO14793 375 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 NME6O75414 186 aaPredicted RBP19.07■□□□□ 0.64
VPS53-216ENST00000574029 ESRRBO95718 433 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 CRHP06850 196 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 INHBBP09529 407 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 GRK2P25098 689 aa19.07■□□□□ 0.64
VPS53-216ENST00000574029 PNLIPRP2P54317 469 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms