RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ACP5P13686 325 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 TGM3Q08188 693 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 ADAM15Q13444 863 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 PLBD1Q6P4A8 553 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 GPR155Q7Z3F1 870 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 CCDC28AQ8IWP9 274 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 ZNF671Q8TAW3 534 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 SATB2Q9UPW6 733 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 A0A0B4J293 547 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 GNB5O14775 395 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 FABP7O15540 132 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 FCER2P06734 321 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 SYPP08247 313 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 PIPP12273 146 aaPredicted RBP13.65□□□□□ -0.22
VPS35-210ENST00000568784 DRD5P21918 477 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 KELP23276 732 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 OPRD1P41143 372 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 SRP9P49458 86 aaKnown RBP13.65□□□□□ -0.22
VPS35-210ENST00000568784 CCR8P51685 355 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 GPNMBQ14956 572 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 PRICKLE2Q7Z3G6 844 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 CAMKMTQ7Z624 323 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 ADGRF3Q8IZF5 1079 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 AKAP1Q92667 903 aaKnown RBP eCLIP13.65□□□□□ -0.22
VPS35-210ENST00000568784 RGMAQ96B86 450 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 ZG16BQ96DA0 208 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 RNF31Q96EP0 1072 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 SLX1AQ9BQ83 275 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 STOML2Q9UJZ1 356 aa13.65□□□□□ -0.22
VPS35-210ENST00000568784 CACNA1IQ9P0X4 2223 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 FOXE1O00358 373 aaPredicted RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 SCO2O43819 266 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 LALBAP00709 142 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ACRP10323 421 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 SYN1P17600 705 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 STXBP1P61764 594 aaKnown RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 ID2Q02363 134 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 EEF1A2Q05639 463 aaKnown RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 FGFBP1Q14512 234 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 GPR68Q15743 365 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 CLDN22Q8N7P3 220 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ADAMTS15Q8TE58 950 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 METTL2AQ96IZ6 378 aaKnown RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 FAIM2Q9BWQ8 316 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 POLDIP3Q9BY77 421 aaKnown RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 KCNK6Q9Y257 313 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 A0A087WUU8 490 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 DAPL1A0PJW8 107 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 J3QLW9 94 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 CD3GP09693 182 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 C6P13671 934 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 PRG2P13727 222 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ZNF19P17023 458 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 SLC1A3P43003 542 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 RPL6Q02878 288 aaKnown RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 FCN2Q15485 313 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ARHGAP15Q53QZ3 475 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 TMEM215Q68D42 235 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 FAM83HQ6ZRV2 1179 aaPredicted RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 UPRTQ96BW1 309 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 C12orf66Q96MD2 445 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ZNF224Q9NZL3 707 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 SRRDQ9UH36 339 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 MGAT4AQ9UM21 535 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 LSM2Q9Y333 95 aaKnown RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 H3BSH0 61 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ZNF780AO75290 641 aaPredicted RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 SAGP10523 405 aaPredicted RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 ACP2P11117 423 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 CCR2P41597 374 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 GCGRP47871 477 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 OR3A3P47888 321 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 DEFB103AP81534 67 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 CAMK2BQ13554 666 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ZNF267Q14586 743 aaPredicted RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 FAM209AQ5JX71 171 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 ZNF770Q6IQ21 691 aaPredicted RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 RD3Q7Z3Z2 195 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 OR4N5Q8IXE1 308 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 CYB561A3Q8NBI2 242 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 CXorf40AQ8TE69 158 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 RFKQ969G6 155 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 SAMD8Q96LT4 415 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 MCHR1Q99705 422 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 DPCDQ9BVM2 203 aaPredicted RBP13.64□□□□□ -0.23
VPS35-210ENST00000568784 B3GAT2Q9NPZ5 323 aa13.64□□□□□ -0.23
VPS35-210ENST00000568784 NPC1O15118 1278 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 ALPPP05187 535 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 CLTBP09497 229 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 KHKP50053 298 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 CHRNEQ04844 493 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 MPP7Q5T2T1 576 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 PRR23CQ6ZRP0 262 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 COMTD1Q86VU5 262 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 IZUMO1Q8IYV9 350 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 GOT1L1Q8NHS2 421 aaPredicted RBP13.63□□□□□ -0.23
VPS35-210ENST00000568784 LRRC20Q8TCA0 184 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 RIPOR3Q96MK2 946 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 GLIPR2Q9H4G4 154 aa13.63□□□□□ -0.23
VPS35-210ENST00000568784 EIF3KQ9UBQ5 218 aaKnown RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms