RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 WDYHV1Q96HA8 205 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 UGT2B28Q9BY64 529 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 STMN4Q9H169 189 aaPredicted RBP13.56□□□□□ -0.24
CLN3-213ENST00000565047 GLIPR2Q9H4G4 154 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 FOLH1BQ9HBA9 442 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 KCNJ16Q9NPI9 418 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 SLC6A5Q9Y345 797 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 DNAJC15Q9Y5T4 150 aa13.56□□□□□ -0.24
CLN3-213ENST00000565047 UPK1AO00322 258 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 GNB5O14775 395 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 ERN1O75460 977 aaKnown RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 FGF4P08620 206 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 IFI6P09912 130 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 ARRB2P32121 409 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 CFAP157Q5JU67 520 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 WIPI1Q5MNZ9 446 aaPredicted RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 ANGPTL8Q6UXH0 198 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 IKBIPQ70UQ0 350 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 FAM9CQ8IZT9 166 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 OR2L13Q8N349 312 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 RIBC1Q8N443 379 aaPredicted RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 FAM83FQ8NEG4 500 aaPredicted RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 OR1J4Q8NGS1 313 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 HOXB13Q92826 284 aaPredicted RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 ZNF764Q96H86 408 aaPredicted RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 AMDHD1Q96NU7 426 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 COL21A1Q96P44 957 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 TRMOQ9BU70 441 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 OSBPL11Q9BXB4 747 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 EXO5Q9H790 373 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 METTL7AQ9H8H3 244 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 RRAGDQ9NQL2 400 aaPredicted RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 SLC17A7Q9P2U7 560 aa13.55□□□□□ -0.24
CLN3-213ENST00000565047 C19orf53Q9UNZ5 99 aaPredicted RBP13.55□□□□□ -0.24
CLN3-213ENST00000565047 C15orf38-AP3S2A0A0A6YYH1 394 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 PRAMEF25A6NGN4 478 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ENO4A6NNW6 628 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 AZIN1O14977 448 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 TBX19O60806 448 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 TRIM13O60858 407 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ABCB7O75027 752 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 CBR3O75828 277 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 TRAPPC6AO75865 159 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 JUNP05412 331 aaKnown RBP13.54□□□□□ -0.24
CLN3-213ENST00000565047 CHRNGP07510 517 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 CREB1P16220 341 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ALDH3A1P30838 453 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 TIMP3P35625 211 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 MAP3K8P41279 467 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 MASP1P48740 699 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 PNLIPRP2P54317 469 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 GFRA1P56159 465 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 WNT3P56703 355 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 IMPG1Q17R60 797 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 RFTN2Q52LD8 501 aaPredicted RBP13.54□□□□□ -0.24
CLN3-213ENST00000565047 KANK2Q63ZY3 851 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 WDR93Q6P2C0 686 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ADGRE4PQ86SQ3 457 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 LIX1Q8N485 282 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 CCDC63Q8NA47 563 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 RELL2Q8NC24 303 aaPredicted RBP13.54□□□□□ -0.24
CLN3-213ENST00000565047 TNIP2Q8NFZ5 429 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 OR10Q1Q8NGQ4 319 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ELP4Q96EB1 424 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 APOPT1Q96IL0 206 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ADOQ96SZ5 270 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 OR2B2Q9GZK3 357 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 MCCC2Q9HCC0 563 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 PFDN4Q9NQP4 134 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 C1orf109Q9NX04 203 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ALKBH4Q9NXW9 302 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 FBXL2Q9UKC9 423 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 ARHGAP21Q5T5U3 1957 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 KIAA1549Q9HCM3 1950 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 POLQO75417 2590 aa13.54□□□□□ -0.24
CLN3-213ENST00000565047 TLDC2A0PJX2 215 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 C17orf51A8MQB3 221 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 SLC28A1O00337 649 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 LSM1O15116 133 aaKnown RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 ZIC3O60481 467 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 SEC22BO75396 215 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 REM1O75628 298 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 SLITRK5O94991 958 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 CPN1P15169 458 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 SDC1P18827 310 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 MC3RP41968 323 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 FRKP42685 505 aaPredicted RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 NCBP2P52298 156 aaKnown RBP eCLIP13.53□□□□□ -0.24
CLN3-213ENST00000565047 PSPHP78330 225 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 PDE7AQ13946 482 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 ERCC6LQ2NKX8 1250 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 ARL13AQ5H913 290 aaPredicted RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 NSUN5P2Q63ZY6 315 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 TMEM107Q6UX40 140 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 YRDCQ86U90 279 aaKnown RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 PLCZ1Q86YW0 608 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 SLC44A2Q8IWA5 706 aaPredicted RBP13.53□□□□□ -0.24
CLN3-213ENST00000565047 CAVIN3Q969G5 261 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 TMCO6Q96DC7 493 aa13.53□□□□□ -0.24
CLN3-213ENST00000565047 BBS4Q96RK4 519 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms