RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 ZNF177Q13360 481 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 NFATC2Q13469 925 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 NPTX1Q15818 432 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KCNJ8Q15842 424 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CDKN3Q16667 212 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 NDUFA5Q16718 116 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 DUOXA1Q1HG43 343 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 HKDC1Q2TB90 917 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PLEKHG6Q3KR16 790 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 LRIT3Q3SXY7 679 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ZNF404Q494X3 552 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GPR33Q49SQ1 333 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CCDC92Q53HC0 331 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 RNASE12Q5GAN4 147 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 ARMC12Q5T9G4 340 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 RNF219Q5W0B1 726 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 PTRHD1Q6GMV3 140 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 OR4F3Q6IEY1 312 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GRHL2Q6ISB3 625 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SLC8B1Q6J4K2 584 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PNCKQ6P2M8 343 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 FUT10Q6P4F1 479 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TMEM65Q6PI78 240 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 C17orf99Q6UX52 265 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CXCL17Q6UXB2 119 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MBOAT1Q6ZNC8 495 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GCNT7Q6ZNI0 430 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 AHSA2Q719I0 299 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SLC24A5Q71RS6 500 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ZNF367Q7RTV3 350 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TSEN54Q7Z6J9 526 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 DSG4Q86SJ6 1040 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ADCK1Q86TW2 530 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CCDC190Q86UF4 302 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SLC22A16Q86VW1 577 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 HORMAD1Q86X24 394 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SNX29P2Q8IUI4 249 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PLD3Q8IV08 490 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SFTPA1Q8IWL2 248 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ENTHD1Q8IYW4 607 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 IQCF1Q8N6M8 205 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 C1orf52Q8N6N3 182 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 SIRT6Q8N6T7 355 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PAF1Q8N7H5 531 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ATAD1Q8NBU5 361 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 HJURPQ8NCD3 748 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 ZNF540Q8NDQ6 660 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KBTBD8Q8NFY9 601 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 OR4C15Q8NGM1 316 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 GOT1L1Q8NHS2 421 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 CLHC1Q8NHS4 586 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MCFD2Q8NI22 146 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 C9orf43Q8TAL5 461 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 SETD6Q8TBK2 473 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 WDR20Q8TBZ3 569 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PIH1D2Q8WWB5 315 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ATL1Q8WXF7 558 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 DNASE1L2Q92874 299 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ULK4Q96C45 1275 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ECHDC3Q96DC8 303 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CXorf40BQ96DE9 158 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 LGALS12Q96DT0 336 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ALG14Q96F25 216 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CMTM7Q96FZ5 175 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 WDFY2Q96P53 400 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MCCC1Q96RQ3 725 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 EGFL8Q99944 293 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 VRK1Q99986 396 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 INPP5KQ9BT40 448 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TBCDQ9BTW9 1192 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 CCDC32Q9BV29 185 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 THUMPD3Q9BV44 507 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 APOL5Q9BWW9 433 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TAPBPLQ9BX59 468 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ARHGAP39Q9C0H5 1083 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 HOXD1Q9GZZ0 328 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 NACA2Q9H009 215 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 DCSTAMPQ9H295 470 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 RIBC2Q9H4K1 309 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 EHD1Q9H4M9 534 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SLC32A1Q9H598 525 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 ELAC1Q9H777 363 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 BRF2Q9HAW0 419 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SPC25Q9HBM1 224 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TMEM165Q9HC07 324 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 MOV10Q9HCE1 1003 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 ZFP14Q9HCL3 533 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 SARS2Q9NP81 518 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 THSD1Q9NS62 852 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KRT84Q9NSB2 600 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 TMEM161AQ9NX61 479 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 THUMPD1Q9NXG2 353 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 CNOT2Q9NZN8 540 aaKnown RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 NPAP1Q9NZP6 1156 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 KIF17Q9P2E2 1029 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 NFKBIL1Q9UBC1 381 aaPredicted RBP2.33□□□□□ -2.04
SPG11-223ENST00000560858 CPA4Q9UI42 421 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 VPS51Q9UID3 782 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 PSORS1C1Q9UIG5 152 aa2.33□□□□□ -2.04
SPG11-223ENST00000560858 BTNL2Q9UIR0 455 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms