RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 AATFQ9NY61 560 aaKnown RBP eCLIP4.34□□□□□ -1.71
VRK1-205ENST00000555402 CUX2O14529 1486 aa4.34□□□□□ -1.71
VRK1-205ENST00000555402 A0A1B0GTH9 108 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 A0A1B0GUL7 405 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 RNF222A6NCQ9 220 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 RPL37AP8A6NKH3 93 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 NPIPA2E9PIF3 369 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 E9PQ18 207 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 IMPA2O14732 288 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 MCF2LO15068 1137 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 ALOX15BO15296 676 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 IDH1O75874 414 aaKnown RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 PCCBP05166 539 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 THRBP10828 461 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 HSPA5P11021 654 aaKnown RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 EPB41P11171 864 aaKnown RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 DLSTP36957 453 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 OSTNP61366 133 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 TRA2BP62995 288 aaKnown RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 IL9RQ01113 521 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 PAX8Q06710 450 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 SLC1A5Q15758 541 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 CD226Q15762 336 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 TMEM41BQ5BJD5 291 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 ZNF311Q5JNZ3 666 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 ACER2Q5QJU3 275 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 PRR5LQ6MZQ0 368 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 PNCKQ6P2M8 343 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 ZNF562Q6V9R5 426 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 NET1Q7Z628 596 aaPredicted RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 EFCAB13Q8IY85 973 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 ABHD12Q8N2K0 398 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 C4orf32Q8N8J7 132 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 TADA1Q96BN2 335 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 VPS39Q96JC1 886 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 VSTM2LQ96N03 204 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 VGLL1Q99990 258 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 FAM173AQ9BQD7 235 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 TBCDQ9BTW9 1192 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 GSDMCQ9BYG8 508 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 TRIM15Q9C019 465 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 WDR76Q9H967 626 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 COG4Q9H9E3 785 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 FARSBQ9NSD9 589 aaKnown RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 ABCC13Q9NSE7 274 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 DCAF13Q9NV06 445 aaKnown RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 DUS2Q9NX74 493 aaKnown RBP4.33□□□□□ -1.72
VRK1-205ENST00000555402 SPATA2Q9UM82 520 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 DHRS7Q9Y394 339 aa4.33□□□□□ -1.72
VRK1-205ENST00000555402 IGHV3OR16-10A0A075B7F0 116 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 EPM2AB3EWF7 344 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 C11orf98E9PRG8 122 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 ANP32DO95626 131 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 UQCRBP14927 111 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 GSK3BP49841 420 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 MFAP2P55001 183 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 HAND2P61296 217 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 ELP6Q0PNE2 266 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 ZP4Q12836 540 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 TPD52L1Q16890 204 aaPredicted RBP4.32□□□□□ -1.72
VRK1-205ENST00000555402 C9orf66Q5T8R8 295 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 ADAMTSL5Q6ZMM2 481 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 STOX1Q6ZVD7 989 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 CENPUQ71F23 418 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 ARMCX2Q7L311 632 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 SH2D6Q7Z4S9 175 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 CBWD2Q8IUF1 395 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 OR10T2Q8NGX3 314 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 OR4Q3Q8NH05 313 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 ZNF689Q96CS4 500 aaPredicted RBP4.32□□□□□ -1.72
VRK1-205ENST00000555402 DTNBP1Q96EV8 351 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 LPAR2Q9HBW0 351 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 RDH8Q9NYR8 311 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 MBD2Q9UBB5 411 aa4.32□□□□□ -1.72
VRK1-205ENST00000555402 FER1L5A0AVI2 2057 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 PARD3Q8TEW0 1356 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 TRABD2BA6NFA1 517 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 MFSD2BA6NFX1 497 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 WASHC1A8K0Z3 465 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 PDLIM1O00151 329 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 CASKO14936 926 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 MBD3O95983 291 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 MT-ND1P03886 318 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 HCKP08631 526 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 FAM200BP0CF97 657 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 CYLC1P35663 651 aaPredicted RBP4.31□□□□□ -1.72
VRK1-205ENST00000555402 ETV5P41161 510 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 PGFP49763 221 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 CCDC57Q2TAC2 916 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 FAM219BQ5XKK7 198 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 SLC25A24Q6NUK1 477 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 NIPAL3Q6P499 406 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 PAQR6Q6TCH4 344 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 METTL7BQ6UX53 244 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 STXBP4Q6ZWJ1 553 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 TMUB2Q71RG4 321 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 LHFPL4Q7Z7J7 247 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 LRRC49Q8IUZ0 686 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 ARL14Q8N4G2 192 aa4.31□□□□□ -1.72
VRK1-205ENST00000555402 FADS6Q8N9I5 356 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms