RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 LETM1O95202 739 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 RPLP0P05388 317 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 PRSS2P07478 247 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 HMBSP08397 361 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CLTAP09496 248 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 FAM106CPP0CH98 169 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 FGF3P11487 239 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 KLK2P20151 261 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SSTR2P30874 369 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 HOXD3P31249 432 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SFTPDP35247 375 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 LEPRP48357 1165 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 ACOT2P49753 483 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TAF6P49848 677 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 ISL1P61371 349 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 KCNJ10P78508 379 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CACNG1Q06432 222 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 SLC3A1Q07837 685 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 DMPKQ09013 629 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CDC20Q12834 499 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 MYBPHQ13203 477 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 GPS2Q13227 327 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 C16orf72Q14CZ0 275 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TAF13Q15543 124 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 OASLQ15646 514 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CST6Q15828 149 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TPD52L1Q16890 204 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CFAP221Q4G0U5 840 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TPRG1LQ5T0D9 272 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF776Q68DI1 518 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 NEK5Q6P3R8 708 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TTC27Q6P3X3 843 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 WDR88Q6ZMY6 472 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 C1QL2Q7Z5L3 287 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 NUDT13Q86X67 352 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CHERPQ8IWX8 916 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 BLIDQ8IZY5 108 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 DAW1Q8N136 415 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 L3MBTL4Q8NA19 623 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 LRRC8CQ8TDW0 803 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 LMX1AQ8TE12 382 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TANKQ92844 425 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 FBXO32Q969P5 355 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 DTD2Q96FN9 168 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 FAM71F1Q96KD3 344 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CATSPER2Q96P56 530 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 DCLK3Q9C098 648 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 STRADBQ9C0K7 418 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 NACA2Q9H009 215 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 RIMS4Q9H426 269 aaPredicted RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 Q9N2K0 584 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 ACKR4Q9NPB9 350 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 CHST11Q9NPF2 352 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 ASF1BQ9NVP2 202 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 NDUFA13Q9P0J0 144 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 KLHL9Q9P2J3 617 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 NOCTQ9UK39 431 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 AGO1Q9UL18 857 aaKnown RBP3.44□□□□□ -1.86
LIMA1-208ENST00000551691 EXOC7Q9UPT5 735 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 TEX264Q9Y6I9 313 aa3.44□□□□□ -1.86
LIMA1-208ENST00000551691 A0A0B4J203 849 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 A0A1W2PP11 408 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 FEZF1A0PJY2 475 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ARHGEF35A5YM69 484 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 PRR32B1ATL7 298 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 PRSS46E5RG02 174 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 E5RGE8 158 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 H3BNX3 289 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 MKRN2OSH3BPM6 223 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 C19orf84I3L1E1 186 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 K7EPI3 171 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TNFRSF13BO14836 293 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 LATO43561 262 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RGS14O43566 566 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GMFGO60234 142 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 FAM189A1O60320 539 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RAD1O60671 282 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RNASEH1O60930 286 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 NME6O75414 186 aaPredicted RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TOM1L1O75674 476 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GRAP2O75791 330 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 OR6A2O95222 327 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 TFAP2AP05549 437 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GSTA2P09210 222 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 IGHV4-30-4P0DP06 118 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ACP2P11117 423 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 MYOD1P15172 320 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 EZRP15311 586 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF23P17027 643 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 GOT1P17174 413 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 S1PR1P21453 382 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 CDH3P22223 829 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 ANXA13P27216 316 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 HLA-FP30511 346 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 CSTF2P33240 577 aaKnown RBP eCLIP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 AHRP35869 848 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 MAGEA11P43364 429 aa3.43□□□□□ -1.86
LIMA1-208ENST00000551691 NSFP46459 744 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 RPL21P46778 160 aaKnown RBP3.43□□□□□ -1.86
LIMA1-208ENST00000551691 PSMD8P48556 350 aa3.43□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms