RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 A3GALT2U3KPV4 340 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 MDC1Q14676 2089 aaKnown RBP14.13□□□□□ -0.15
USP28-214ENST00000545540 A0A1W2PP55 124 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 A0A1W2PPK0 400 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 FAM47E-STBD1D6RA91 191 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 SRPRAP08240 638 aaKnown RBP14.13□□□□□ -0.15
USP28-214ENST00000545540 GKN3PP0CG01 181 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 MTNR1AP48039 350 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 PCDH1Q08174 1060 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 NANOGNBQ7Z5D8 188 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 MORN4Q8NDC4 146 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 SETD7Q8WTS6 366 aaKnown RBP14.13□□□□□ -0.15
USP28-214ENST00000545540 TMEM255BQ8WV15 326 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 SLC25A46Q96AG3 418 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 ENKD1Q9H0I2 346 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 ISG20L2Q9H9L3 353 aaKnown RBP14.13□□□□□ -0.15
USP28-214ENST00000545540 CLCA2Q9UQC9 943 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 CA5BQ9Y2D0 317 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 CNTRLQ7Z7A1 2325 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 NR2F6P10588 404 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 SEC13P55735 322 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 IL18Q14116 193 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 LRRC32Q14392 662 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 ELAVL3Q14576 367 aaKnown RBP14.13□□□□□ -0.15
USP28-214ENST00000545540 ZNF544Q6NX49 715 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 IKBIPQ70UQ0 350 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 KIAA0907Q7Z7F0 614 aaPredicted RBP14.13□□□□□ -0.15
USP28-214ENST00000545540 NRMQ8IXM6 262 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 ACOT4Q8N9L9 421 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 ZCCHC10Q8TBK6 192 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 TMEM74BQ9NUR3 256 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 WDFY3Q8IZQ1 3526 aa14.13□□□□□ -0.15
USP28-214ENST00000545540 LOC102723532A0A0G2JNH3 316 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 CCDC182A6NF36 153 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 MAGEB4O15481 346 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 PLA2G10O15496 165 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 TRIM23P36406 574 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 EPHA5P54756 1037 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.12□□□□□ -0.15
USP28-214ENST00000545540 MTFR2Q6P444 385 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 FAM92BQ6ZTR7 304 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 ASB18Q6ZVZ8 466 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 KLBQ86Z14 1044 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 ZNF557Q8N988 423 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 SLC16A11Q8NCK7 471 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 OR51G2Q8NGK0 314 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 OR2A1Q8NGT9 310 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 SUN3Q8TAQ9 357 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 TEX47Q8TBZ9 253 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 KCTD7Q96MP8 289 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 MENTQ9BUN1 341 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 POLMQ9NP87 494 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 ENOPH1Q9UHY7 261 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 SLC13A4Q9UKG4 626 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 SNX7Q9UNH6 387 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 SLC31A1O15431 190 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 HOXC11O43248 304 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 AIFM1O95831 613 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 MRPL3P09001 348 aaKnown RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 LIMS3P0CW19 117 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 LIMS4P0CW20 117 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 WNT4P56705 351 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 MLLT11Q13015 90 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 FAM78AQ5JUQ0 283 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 TMEM31Q5JXX7 168 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 CNIH2Q6PI25 160 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 HOMEZQ8IX15 550 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 FBXO15Q8NCQ5 510 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 FLCNQ8NFG4 579 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 OR4E2Q8NGC2 313 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 TMCO6Q96DC7 493 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 CHFRQ96EP1 664 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 PDE9AO76083 593 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 ZIC2O95409 532 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 FGBP02675 491 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 TAS2R38P59533 333 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 SCN1BQ07699 218 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 METRNLQ641Q3 311 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 PSRC1Q6PGN9 363 aaPredicted RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 MARCH9Q86YJ5 346 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 OR4Q3Q8NH05 313 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 WACQ9BTA9 647 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 DDX31Q9H8H2 851 aaKnown RBP14.12□□□□□ -0.15
USP28-214ENST00000545540 B3GAT2Q9NPZ5 323 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 CHST2Q9Y4C5 530 aa14.12□□□□□ -0.15
USP28-214ENST00000545540 A0A075B6Q4 140 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 OR6C70A6NIJ9 312 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 PDX1P52945 283 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 CDH11P55287 796 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 BTN3A2P78410 334 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 SRSF5Q13243 272 aaKnown RBP14.11□□□□□ -0.15
USP28-214ENST00000545540 SLC9A5Q14940 896 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 SLC27A4Q6P1M0 643 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 SECISBP2Q96T21 854 aaKnown RBP14.11□□□□□ -0.15
USP28-214ENST00000545540 TESQ9UGI8 421 aaKnown RBP14.11□□□□□ -0.15
USP28-214ENST00000545540 ISM1B1AKI9 464 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 CDC42EP2O14613 210 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 CPNE3O75131 537 aaKnown RBP14.11□□□□□ -0.15
USP28-214ENST00000545540 REM1O75628 298 aa14.11□□□□□ -0.15
USP28-214ENST00000545540 PRG2P13727 222 aa14.11□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms