RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 TM9SF4Q92544 642 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 RCN3Q96D15 328 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 AURKBQ96GD4 344 aaPredicted RBP15.82■□□□□ 0.12
LIG1-204ENST00000542460 STACQ99469 402 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 RNF32Q9H0A6 362 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 PIGUQ9H490 435 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 EFCAB1Q9HAE3 211 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 IL1RL2Q9HB29 575 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 DUSP22Q9NRW4 184 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 GID8Q9NWU2 228 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 OR10H1Q9Y4A9 318 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 ZNF451Q9Y4E5 1061 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 PCDHGB3Q9Y5G1 929 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 GMEB1Q9Y692 573 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 MED13Q9UHV7 2174 aa15.82■□□□□ 0.12
LIG1-204ENST00000542460 ZNF354AO60765 605 aaPredicted RBP15.81■□□□□ 0.12
LIG1-204ENST00000542460 NADKO95544 446 aaPredicted RBP15.81■□□□□ 0.12
LIG1-204ENST00000542460 FAM87AP0C7U9 286 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 PPIBP23284 216 aaKnown RBP15.81■□□□□ 0.12
LIG1-204ENST00000542460 GABRA3P34903 492 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 MAGEA8P43361 318 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 MAN2A2P49641 1150 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 ANXA11P50995 505 aaKnown RBP15.81■□□□□ 0.12
LIG1-204ENST00000542460 RPS26P62854 115 aaKnown RBP15.81■□□□□ 0.12
LIG1-204ENST00000542460 KRT72Q14CN4 511 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 DUSP5Q16690 384 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 CYP27C1Q4G0S4 372 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 IGFL3Q6UXB1 125 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 TRPM8Q7Z2W7 1104 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 FBXO30Q8TB52 745 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 ASB15Q8WXK1 588 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 HAS2Q92819 552 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 CGREF1Q99674 301 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 RAD21L1Q9H4I0 556 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 ZBTB20Q9HC78 741 aaPredicted RBP15.81■□□□□ 0.12
LIG1-204ENST00000542460 ARL8BQ9NVJ2 186 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 NIPSNAP3AQ9UFN0 247 aaPredicted RBP15.81■□□□□ 0.12
LIG1-204ENST00000542460 TAGLN3Q9UI15 199 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 NPFFR2Q9Y5X5 522 aa15.81■□□□□ 0.12
LIG1-204ENST00000542460 EVPLLA8MZ36 301 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 ERVH48-1M5A8F1 160 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 AIM2O14862 343 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 UNC5CO95185 931 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 WDPCPO95876 746 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 AGR2O95994 175 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 C1QCP02747 245 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 NAGAP17050 411 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 ABCD3P28288 659 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 CASRP41180 1078 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 SOX3P41225 446 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 CYB561P49447 251 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 HLCSP50747 726 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 CASP9P55211 416 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 RUNDC3AQ59EK9 446 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 HPS6Q86YV9 775 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 GPALPP1Q8IXQ4 340 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 DND1Q8IYX4 353 aaKnown RBP15.8■□□□□ 0.12
LIG1-204ENST00000542460 SLC34A3Q8N130 599 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 OR4N2Q8NGD1 307 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 OR52N2Q8NGI0 321 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 PNPT1Q8TCS8 783 aaKnown RBP15.8■□□□□ 0.12
LIG1-204ENST00000542460 ROPN1LQ96C74 230 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 LRRC58Q96CX6 371 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 SLC35A4Q96G79 324 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 ANKRD27Q96NW4 1050 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 OR7D2Q96RA2 312 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 UTP23Q9BRU9 249 aaKnown RBP15.8■□□□□ 0.12
LIG1-204ENST00000542460 OR51I1Q9H343 314 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 SERHL2Q9H4I8 314 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 CBLCQ9ULV8 474 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 CORO2BQ9UQ03 480 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 IGSF10Q6WRI0 2623 aa15.8■□□□□ 0.12
LIG1-204ENST00000542460 A8MVJ9 347 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 ASNA1O43681 348 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 FBXO45P0C2W1 286 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 KRT20P35900 424 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 PIGAP37287 484 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 CD96P40200 585 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 TMED10P49755 219 aaKnown RBP15.79■□□□□ 0.12
LIG1-204ENST00000542460 KHKP50053 298 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 MVDP53602 400 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 ARG2P78540 354 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 OC90Q02509 493 aaPredicted RBP15.79■□□□□ 0.12
LIG1-204ENST00000542460 PLCXD2Q0VAA5 305 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 ART3Q13508 389 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 TUBA3CQ13748 450 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 DECR1Q16698 335 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 DDX59Q5T1V6 619 aaKnown RBP eCLIP15.79■□□□□ 0.12
LIG1-204ENST00000542460 TNFAIP8L2Q6P589 184 aaPredicted RBP15.79■□□□□ 0.12
LIG1-204ENST00000542460 TUBA3EQ6PEY2 450 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 LYPD8Q6UX82 237 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 ZADH2Q8N4Q0 377 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 COX18Q8N8Q8 333 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 OR5D16Q8NGK9 328 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 C9orf43Q8TAL5 461 aaPredicted RBP15.79■□□□□ 0.12
LIG1-204ENST00000542460 PIK3R3Q92569 461 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 TMBIM1Q969X1 311 aa15.79■□□□□ 0.12
LIG1-204ENST00000542460 OTUB1Q96FW1 271 aaPredicted RBP15.79■□□□□ 0.12
LIG1-204ENST00000542460 TRIM45Q9H8W5 580 aaPredicted RBP15.79■□□□□ 0.12
LIG1-204ENST00000542460 HPF1Q9NWY4 346 aa15.79■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms