RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 ARHGAP11AQ6P4F7 1023 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 PAOXQ6QHF9 649 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 ACAD11Q709F0 780 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 CAMKMTQ7Z624 323 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 ZNF227Q86WZ6 799 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 RIMKLAQ8IXN7 391 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 LGI4Q8N135 537 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 ARMC10Q8N2F6 343 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 LRRC25Q8N386 305 aaPredicted RBP8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 TMEM156Q8N614 296 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 OR8K3Q8NH51 312 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 SLC2A12Q8TD20 617 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 ZNF675Q8TD23 568 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 ZNF721Q8TF20 911 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 RIT1Q92963 219 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 EXOSC8Q96B26 276 aaKnown RBP8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 PPWD1Q96BP3 646 aaKnown RBP8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 PPCDCQ96CD2 204 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 CTHRC1Q96CG8 243 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 ERP27Q96DN0 273 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 VMP1Q96GC9 406 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 FBXL20Q96IG2 436 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 ZNF317Q96PQ6 595 aaPredicted RBP8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 PRPF18Q99633 342 aaKnown RBP8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 REPIN1Q9BWE0 567 aaKnown RBP8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 BRINP2Q9C0B6 783 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 TCF7L2Q9NQB0 619 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 RYDENQ9NUL5 291 aaKnown RBP8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 AIG1Q9NVV5 245 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 FAM53CQ9NYF3 392 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 EDARQ9UNE0 448 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 EML6Q6ZMW3 1958 aa8.02□□□□□ -1.13
CLSTN3-212ENST00000541770 A0A1W2PS29 197 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 FAM166BA8MTA8 275 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 CDK2AP1O14519 115 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ANKRD28O15084 1053 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 UBDO15205 165 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 POLR3GO15318 223 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 AKAP10O43572 662 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 LRATO95237 230 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 IGKV3-11P04433 115 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 VIMP08670 466 aaKnown RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 TROVE2P10155 538 aaKnown RBP eCLIP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 IDO1P14902 403 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 FOSL1P15407 271 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 NT5EP21589 574 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 NTSP30990 170 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 KIR2DL3P43628 341 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 MRPL19P49406 292 aaKnown RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 HLCSP50747 726 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 CLNS1AP54105 237 aaKnown RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 MLF1P58340 268 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 IRX1P78414 480 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 DUSP2Q05923 314 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 FUT7Q11130 342 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 PRSS53Q2L4Q9 553 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 MPEG1Q2M385 716 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 DPY19L1Q2PZI1 675 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 PRICKLE4Q2TBC4 344 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ZNF750Q32MQ0 723 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 GXYLT1Q4G148 440 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 PDCD4Q53EL6 469 aaKnown RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ZNF385BQ569K4 471 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 C6orf163Q5TEZ5 329 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 TMEM198Q66K66 360 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 NXNQ6DKJ4 435 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ARSKQ6UWY0 536 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 DGAT2L6Q6ZPD8 337 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 WDR53Q7Z5U6 358 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 BIVMQ86UB2 503 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 GALNT12Q8IXK2 581 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 CCDC116Q8IYX3 515 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 CYP4Z2PQ8N1L4 340 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 OR7G1Q8NGA0 311 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 CLHC1Q8NHS4 586 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 C16orf52Q8NHV5 167 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 GFM2Q969S9 779 aaKnown RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 NCLNQ969V3 563 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 TESCQ96BS2 214 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 COQ8BQ96D53 544 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ZBED6CLQ96FA7 236 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 SENP5Q96HI0 755 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 OR52B2Q96RD2 323 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 BBS4Q96RK4 519 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 EBF4Q9BQW3 602 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 DEFB126Q9BYW3 111 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 DPY30Q9C005 99 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 OR8D2Q9GZM6 311 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 DLL4Q9NR61 685 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 PNPLA3Q9NST1 481 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ACSS1Q9NUB1 689 aaPredicted RBP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ATAD3AQ9NVI7 634 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 FGFR1OP2Q9NVK5 253 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 SDAD1Q9NVU7 687 aaKnown RBP eCLIP8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ALKBH4Q9NXW9 302 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 MAT2BQ9NZL9 334 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 SH3BP4Q9P0V3 963 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 COPS7AQ9UBW8 275 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ZNF639Q9UID6 485 aa8.01□□□□□ -1.13
CLSTN3-212ENST00000541770 ERVK-11Q9UQG0 969 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms