RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 FAM214AQ32MH5 1076 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 INAVAQ3KP66 663 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 FRRS1Q6ZNA5 592 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 SLC46A3Q7Z3Q1 461 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 ARHGEF39Q8N4T4 335 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 OR4K5Q8NGD3 323 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 FNDC8Q8TC99 324 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 ZNF675Q8TD23 568 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 DIO2Q92813 273 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 ZG16BQ96DA0 208 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 ANKRD19PQ9H560 264 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 EQTNQ9NQ60 294 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 GPR55Q9Y2T6 319 aaPredicted RBP12.9□□□□□ -0.34
RTN3-210ENST00000540798 PMF1-BGLAPU3KQ54 211 aa12.9□□□□□ -0.34
RTN3-210ENST00000540798 CYR61O00622 381 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 NME6O75414 186 aaPredicted RBP12.89□□□□□ -0.35
RTN3-210ENST00000540798 ATP1B1P05026 303 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 NAT2P11245 290 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 TLX1P31314 330 aaPredicted RBP12.89□□□□□ -0.35
RTN3-210ENST00000540798 PDX1P52945 283 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 VBP1P61758 197 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 EFNB1P98172 346 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 ARHGAP11BQ3KRB8 267 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 ATAD3BQ5T9A4 648 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 SYT13Q7L8C5 426 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 HMGN2P46Q86SG4 172 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 VRK2Q86Y07 508 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 DACH2Q96NX9 599 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 GPA33Q99795 319 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 C11orf16Q9NQ32 467 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 SOX14O95416 240 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 PTHP01270 115 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 THEGLP0DJG4 465 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 CHRNB1P11230 501 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 PVRP15151 417 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 UGT2B10P36537 528 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 SIM1P81133 766 aaPredicted RBP12.89□□□□□ -0.35
RTN3-210ENST00000540798 OCLNQ16625 522 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 TIGD6Q17RP2 521 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 C19orf48Q6RUI8 117 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 STX19Q8N4C7 294 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 SLC15A4Q8N697 577 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 SLC16A11Q8NCK7 471 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 RERGQ96A58 199 aaPredicted RBP12.89□□□□□ -0.35
RTN3-210ENST00000540798 LGALS12Q96DT0 336 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 ALOXE3Q9BYJ1 711 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 HRASLS2Q9NWW9 162 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 OSGIN1Q9UJX0 560 aa12.89□□□□□ -0.35
RTN3-210ENST00000540798 C19orf53Q9UNZ5 99 aaPredicted RBP12.89□□□□□ -0.35
RTN3-210ENST00000540798 A0A087WV62 115 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 A0A1W2PPC4 97 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 KRBA1A5PL33 1030 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 OR5K3A6NET4 321 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 PORP16435 677 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 NCS1P62166 190 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 CDK5Q00535 292 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 ANKDD1AQ495B1 522 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 RNLSQ5VYX0 342 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 PLAG1Q6DJT9 500 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 ZNF367Q7RTV3 350 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 PRSS41Q7RTY9 318 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 C16orf62Q7Z3J2 963 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 WDR53Q7Z5U6 358 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 GJD3Q8N144 294 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 FLCNQ8NFG4 579 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 FAM174AQ8TBP5 190 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 ADAMTS15Q8TE58 950 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 GAS2L1Q99501 681 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 KLHL25Q9H0H3 589 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 MBTPS2O43462 519 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 FCMRO60667 390 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 GALR3O60755 368 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 ENTPD6O75354 484 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 ACP2P11117 423 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 POU1F1P28069 291 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 TYW3Q6IPR3 259 aaKnown RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 MRGPREQ86SM8 312 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 IQCHQ86VS3 1027 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 ZNF655Q8N720 491 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 FRMD1Q8N878 549 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 TMEM52Q8NDY8 209 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 SIMC1Q8NDZ2 872 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 OR8J1Q8NGP2 316 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 RPL3LQ92901 407 aaKnown RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 CDS1Q92903 461 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 SH3YL1Q96HL8 342 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 PLEKHA8Q96JA3 519 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 AKIP1Q9NQ31 210 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 POMT2Q9UKY4 750 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 B3GNT3Q9Y2A9 372 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 CORINQ9Y5Q5 1042 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 A0A087WUU8 490 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 MAP3K8P41279 467 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 LSM11P83369 360 aaKnown RBP eCLIP12.88□□□□□ -0.35
RTN3-210ENST00000540798 FOXD4Q12950 439 aaPredicted RBP12.88□□□□□ -0.35
RTN3-210ENST00000540798 MEDAGQ5VYS4 303 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 SLCO6A1Q86UG4 719 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 CA13Q8N1Q1 262 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 Q96MT0 163 aa12.88□□□□□ -0.35
RTN3-210ENST00000540798 SLC6A18Q96N87 628 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 67.8 ms