RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 CHRDQ9H2X0 955 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 IMP3Q9NV31 184 aaKnown RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 FLRT1Q9NZU1 646 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 NFKBIL1Q9UBC1 381 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CLEC2DQ9UHP7 191 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 HTTP42858 3142 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 A0A087X1B8 175 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ZNF593O00488 134 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 PRRG1O14668 218 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CSO75390 466 aaKnown RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CRHP06850 196 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ACPPP15309 386 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 IL1RNP18510 177 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CNR1P21554 472 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 GIFP27352 417 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 HOXC12P31275 282 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CLDN10P78369 228 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CTBP1Q13363 440 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 PWP1Q13610 501 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 MBTPS1Q14703 1052 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 SPHARQ15513 63 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 MTFR2Q6P444 385 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ZNF613Q6PF04 617 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 FAM111BQ6SJ93 734 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 VITQ6UXI7 678 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CLEC9AQ6UXN8 241 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 TAS1R3Q7RTX0 852 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 TSPAN33Q86UF1 283 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 FJX1Q86VR8 437 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 RASGEF1AQ8N9B8 481 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 PCSK9Q8NBP7 692 aaKnown RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 NETO2Q8NC67 525 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 DENND6BQ8NEG7 585 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 OR5T3Q8NGG3 340 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 SPATA22Q8NHS9 363 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ACOT11Q8WXI4 607 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 RFT1Q96AA3 541 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ORAI1Q96D31 301 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 L3HYPDHQ96EM0 354 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 FAM193BQ96PV7 902 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 UCN2Q96RP3 112 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ZNF670Q9BS34 389 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 NAA11Q9BSU3 229 aaPredicted RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 TMPRSS13Q9BYE2 586 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 TLNRD1Q9H1K6 362 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 PRO1933Q9H354 126 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 C2orf42Q9NWW7 574 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ACSL6Q9UKU0 697 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 DUSP12Q9UNI6 340 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 CARHSP1Q9Y2V2 147 aaKnown RBP8.94□□□□□ -0.98
CLIP1-214ENST00000540539 OR10H1Q9Y4A9 318 aa8.94□□□□□ -0.98
CLIP1-214ENST00000540539 ERI2A8K979 691 aaKnown RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 DDX39AO00148 427 aaKnown RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 RFXAPO00287 272 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 SNRPCP09234 159 aaKnown RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 LCP1P13796 627 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 BPIP17213 487 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 MAP3K8P41279 467 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 LHX1P48742 406 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 SRP9P49458 86 aaKnown RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 SEC61A1P61619 476 aaKnown RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 PKIAP61925 76 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 HTR4Q13639 388 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 OR52W1Q6IF63 320 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 UQCC3Q6UW78 93 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 LRRTM4Q86VH4 590 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 ZNF561Q8N587 486 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 TMEM161BQ8NDZ6 487 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 CPEB3Q8NE35 698 aaKnown RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 SELENOMQ8WWX9 145 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 CENPIQ92674 756 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 WDR89Q96FK6 387 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 ZNF558Q96NG5 402 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 TGM7Q96PF1 710 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 THAP7Q9BT49 309 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 SNRNP25Q9BV90 132 aaKnown RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 PINK1Q9BXM7 581 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 MYOZ1Q9NP98 299 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 PRDM7Q9NQW5 492 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 ZIM2Q9NZV7 527 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 OR12D3Q9UGF7 316 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 GOLT1BQ9Y3E0 138 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 A0A1B0GTL3 188 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 C5orf58C9J3I9 102 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 AP4M1O00189 453 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 AGR2O95994 175 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 UGT2B7P16662 529 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 ZNF14P17017 642 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 NOS3P29474 1203 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 CEACAM6P40199 344 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 SURF2Q15527 256 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 TMEM35AQ53FP2 167 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 C10orf91Q5T1B1 145 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 FAM102AQ5T9C2 384 aaPredicted RBP8.93□□□□□ -0.98
CLIP1-214ENST00000540539 Q6ZTK2 550 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 MON1AQ86VX9 555 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 OR4A15Q8NGL6 344 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 TM9SF4Q92544 642 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 KCTD7Q96MP8 289 aa8.93□□□□□ -0.98
CLIP1-214ENST00000540539 KATNBL1Q9H079 304 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms