RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 CADM3Q8N126 398 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 ITFG2Q969R8 447 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 CENPOQ9BU64 300 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 PINK1Q9BXM7 581 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 POLMQ9NP87 494 aaPredicted RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 EVA1BQ9NVM1 165 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 TAS2R16Q9NYV7 291 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 USP36Q9P275 1121 aaKnown RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 CPNE7Q9UBL6 633 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 DAPP1Q9UN19 280 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 MRPS2Q9Y399 296 aaKnown RBP12.54□□□□□ -0.4
VPS33B-202ENST00000535906 GON4LQ3T8J9 2241 aa12.54□□□□□ -0.4
VPS33B-202ENST00000535906 TLR4O00206 839 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 FRS3O43559 492 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 FCMRO60667 390 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ZIC2O95409 532 aaPredicted RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 MMP11P24347 488 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SOWAHCQ53LP3 525 aaPredicted RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ZNF311Q5JNZ3 666 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 PLAG1Q6DJT9 500 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 Q6ZS52 159 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 PRSS41Q7RTY9 318 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ABI3BPQ7Z7G0 1075 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ZER1Q7Z7L7 766 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SLC22A16Q86VW1 577 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 LRRC25Q8N386 305 aaPredicted RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SLC16A11Q8NCK7 471 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 OR4K5Q8NGD3 323 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 GPBAR1Q8TDU6 330 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 FAM3CQ92520 227 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SLC35A4Q96G79 324 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 OR5M11Q96RB7 305 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SERINC2Q96SA4 455 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 GPA33Q99795 319 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 CHCHD6Q9BRQ6 235 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ACTRT3Q9BYD9 372 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 RNF167Q9H6Y7 350 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 NDOR1Q9UHB4 597 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 GPR55Q9Y2T6 319 aaPredicted RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 CHST2Q9Y4C5 530 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ZNF860A6NHJ4 632 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 CASC3O15234 703 aaKnown RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ASNA1O43681 348 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ENTPD6O75354 484 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 TNFP01375 233 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SOX18P35713 384 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SNRPGP62308 76 aaKnown RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 MED22Q15528 200 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ZNF181Q2M3W8 571 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 PRAMEF8Q5VWM4 474 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 PRAMEF7Q5VXH5 474 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SLX4IPQ5VYV7 408 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 LYSMD2Q8IV50 215 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 MORN4Q8NDC4 146 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 PRRC1Q96M27 445 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 TRNT1Q96Q11 434 aaKnown RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 MGLLQ99685 303 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 ZFYVE21Q9BQ24 234 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SP140LQ9H930 580 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 SLC25A19Q9HC21 320 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 UGT2A1Q9Y4X1 527 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 MTCH2Q9Y6C9 303 aa12.53□□□□□ -0.4
VPS33B-202ENST00000535906 TDRD6O60522 2096 aaKnown RBP12.53□□□□□ -0.4
VPS33B-202ENST00000535906 PRAMEF26H0Y7S4 382 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 H0YGG7 62 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 CCRL2O00421 344 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 SLITRK5O94991 958 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 EIF2S1P05198 315 aaKnown RBP12.52□□□□□ -0.4
VPS33B-202ENST00000535906 TNNI3P19429 210 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 S100A5P33763 92 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 RABIFP47224 123 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 ARF3P61204 181 aaPredicted RBP12.52□□□□□ -0.4
VPS33B-202ENST00000535906 ZNF45Q02386 682 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 PRKCDQ05655 676 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 CDC20Q12834 499 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 TIMM50Q3ZCQ8 353 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 C12orf73Q69YU5 71 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 C16orf62Q7Z3J2 963 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 IQCHQ86VS3 1027 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 ZNF761Q86XN6 746 aaPredicted RBP12.52□□□□□ -0.4
VPS33B-202ENST00000535906 OR4K14Q8NGD5 310 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 ROGDIQ9GZN7 287 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 POLE4Q9NR33 117 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 PHF11Q9UIL8 331 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 NDRG2Q9UN36 371 aaKnown RBP12.52□□□□□ -0.4
VPS33B-202ENST00000535906 CYP8B1Q9UNU6 501 aa12.52□□□□□ -0.4
VPS33B-202ENST00000535906 B3GALT2O43825 422 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 PDX1P52945 283 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 PPP1CAP62136 330 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 UBE2IP63279 158 aaKnown RBP12.52□□□□□ -0.41
VPS33B-202ENST00000535906 EIF2B5Q13144 721 aaKnown RBP12.52□□□□□ -0.41
VPS33B-202ENST00000535906 TSTQ16762 297 aaKnown RBP12.52□□□□□ -0.41
VPS33B-202ENST00000535906 MFSD12Q6NUT3 480 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 BCDIN3DQ7Z5W3 292 aaKnown RBP12.52□□□□□ -0.41
VPS33B-202ENST00000535906 ATCAYQ86WG3 371 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 IQCF1Q8N6M8 205 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 CAMKVQ8NCB2 501 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 WDR36Q8NI36 951 aaKnown RBP12.52□□□□□ -0.41
VPS33B-202ENST00000535906 ADAMTS15Q8TE58 950 aa12.52□□□□□ -0.41
VPS33B-202ENST00000535906 SLC37A2Q8TED4 501 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms