RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, human

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF1-208	ENST00000532560	IL1RL2	Q9HB29	575 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	PROK2	Q9HC23	129 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	NPIPA1	Q9UND3	350 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	MAST4	O15021	2626 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZGRF1	Q86YA3	2104 aa		13.82	□□□□□ -0.2
CPSF1-208	ENST00000532560	RELN	P78509	3460 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	TTC36	A6NLP5	189 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	ASNA1	O43681	348 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	HS6ST1	O60243	411 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	ABCB7	O75027	752 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	NME6	O75414	186 aa	Predicted RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	STS	P08842	583 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	KIT	P10721	976 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	KCNJ2	P63252	427 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	PSG6	Q00889	435 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	PLGLB1	Q02325	96 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	CMPK2	Q5EBM0	449 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	GHDC	Q8N2G8	530 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	PSMA8	Q8TAA3	256 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	LRRC8C	Q8TDW0	803 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	DYDC1	Q8WWB3	177 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	DIO2	Q92813	273 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	HOXB13	Q92826	284 aa	Predicted RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	HGD	Q93099	445 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	TMBIM1	Q969X1	311 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	NTNG2	Q96CW9	530 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC35A4	Q96G79	324 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	MAGED4	Q96JG8	741 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	MAEL	Q96JY0	434 aa	Known RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	MS4A4E	Q96PG1	132 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	LMF2	Q9BU23	707 aa	Known RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	DOHH	Q9BU89	302 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	BHLHE41	Q9C0J9	482 aa	Predicted RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	NEUROD4	Q9HD90	331 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	PLSCR2	Q9NRY7	297 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	SIRT3	Q9NTG7	399 aa	Predicted RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	TUBA8	Q9NY65	449 aa	Predicted RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	BOK	Q9UMX3	212 aa	Predicted RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	OSGIN2	Q9Y236	505 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	SEC23IP	Q9Y6Y8	1000 aa	Known RBP	13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	EML6	Q6ZMW3	1958 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	HIVEP3	Q5T1R4	2406 aa		13.81	□□□□□ -0.2
CPSF1-208	ENST00000532560	GIMAP1-GIMAP5	A0A087WTJ2	511 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560		A0A1W2PRB8	838 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR6C70	A6NIJ9	312 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	LRRC3C	A6NJW4	275 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	ANKRD28	O15084	1053 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	TRIM3	O75382	744 aa	Predicted RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	ALDOC	P09972	364 aa	Known RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	EFNA1	P20827	205 aa	Predicted RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	EPHA3	P29320	983 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	PPIA	P62937	165 aa	Known RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	UBAP2L	Q14157	1087 aa	Known RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNHIT3	Q15649	155 aa	Predicted RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	C4orf17	Q53FE4	359 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	NUP54	Q7Z3B4	507 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	MAVS	Q7Z434	540 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	SPATA19	Q7Z5L4	167 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC44A2	Q8IWA5	706 aa	Predicted RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	FAM109A	Q8N4B1	249 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	CEP70	Q8NHQ1	597 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	TESC	Q96BS2	214 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	GIMAP5	Q96F15	307 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNF597	Q96LX8	424 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	COL21A1	Q96P44	957 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	DUSP26	Q9BV47	211 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	ANGPTL4	Q9BY76	406 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	DPY30	Q9C005	99 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	RABEP2	Q9H5N1	569 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNF703	Q9H7S9	590 aa	Predicted RBP	13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	AIG1	Q9NVV5	245 aa		13.8	□□□□□ -0.2
CPSF1-208	ENST00000532560	FLNC	Q14315	2725 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	FAM166B	A8MTA8	275 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560		H0YHG0	523 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	ZNF195	O14628	629 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	EMC8	O43402	210 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	TSPAN2	O60636	221 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	SLC19A2	O60779	497 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	UGT2B11	O75310	529 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	SEMA7A	O75326	666 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	SNX4	O95219	450 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	IL12B	P29460	328 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	KRT20	P35900	424 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	CASP3	P42574	277 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	CLNS1A	P54105	237 aa	Known RBP	13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	PRR5	P85299	388 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	EFR3A	Q14156	821 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	DPY19L1	Q2PZI1	675 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	LSM12	Q3MHD2	195 aa	Known RBP	13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	CYP27C1	Q4G0S4	372 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	BICRAL	Q6AI39	1079 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560		Q6ZPB1	254 aa	Predicted RBP	13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	CHERP	Q8IWX8	916 aa	Known RBP	13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	TMEM251	Q8N6I4	163 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR8J2	Q8NGG1	315 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR52N2	Q8NGI0	321 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	ACTRT2	Q8TDY3	377 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	NUDT8	Q8WV74	236 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	OR5P2	Q8WZ92	322 aa		13.79	□□□□□ -0.2
CPSF1-208	ENST00000532560	FAM120B	Q96EK7	910 aa	Known RBP	13.79	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms