RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 DHPSP49366 369 aaPredicted RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 NUDT2P50583 147 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 RASSF2P50749 326 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ATP4BP51164 291 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 CCR8P51685 355 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 CCR9P51686 369 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 DGKQP52824 942 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 MAZP56270 477 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 RPS13P62277 151 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 CYP4F2P78329 520 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ELF3P78545 371 aaPredicted RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 REEP5Q00765 189 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 EMX2Q04743 252 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 CSTF1Q05048 431 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 TRAP1Q12931 704 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 ART3Q13508 389 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 GPR18Q14330 331 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 SSPNQ14714 243 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ARHGAP19Q14CB8 494 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 GSTA3Q16772 222 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 RNF151Q2KHN1 245 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 TBC1D25Q3MII6 688 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 NRN1LQ496H8 165 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 VPS26BQ4G0F5 336 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 RFTN2Q52LD8 501 aaPredicted RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 PDCD4Q53EL6 469 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 USP39Q53GS9 565 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 MED27Q6P2C8 311 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ARHGAP11AQ6P4F7 1023 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 WASH2PQ6VEQ5 465 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 SLC36A4Q6YBV0 504 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 MED25Q71SY5 747 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 DOK3Q7L591 496 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 R3HCC1LQ7Z5L2 792 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 ADCK2Q7Z695 626 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 PARGQ86W56 976 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ZFAND4Q86XD8 727 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 PLD3Q8IV08 490 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.93□□□□□ -1.78
CD44-226ENST00000527889 DEFB107AQ8IZN7 70 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 DSELQ8IZU8 1212 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 NAGSQ8N159 534 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 GALNT4Q8N4A0 578 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 KLHL36Q8N4N3 616 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 RAB42Q8N4Z0 105 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 PSD4Q8NDX1 1056 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 CADM4Q8NFZ8 388 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 OR7G3Q8NG95 312 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 OR4E2Q8NGC2 313 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 OR56B2PQ8NGI1 322 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 OR2L8Q8NGY9 312 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 OR10G6Q8NH81 332 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 HUS1BQ8NHY5 278 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ZFP28Q8NHY6 868 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 CDC26Q8NHZ8 85 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 RP9Q8TA86 221 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 WDR20Q8TBZ3 569 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 LMX1AQ8TE12 382 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 SLC37A2Q8TED4 501 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 CREB3L4Q8TEY5 395 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 SETD7Q8WTS6 366 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 WDR60Q8WVS4 1066 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 LCN9Q8WX39 176 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 TFAP2CQ92754 450 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 EDAQ92838 391 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 MCUR1Q96AQ8 359 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 VPS33AQ96AX1 596 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 PPP1R14BQ96C90 147 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 SPDL1Q96EA4 605 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 WDR34Q96EX3 536 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 CMTM7Q96FZ5 175 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ZDHHC12Q96GR4 267 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 APOLD1Q96LR9 279 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 DOCK7Q96N67 2140 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 PRAP1Q96NZ9 151 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 TSSK3Q96PN8 268 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 RAB3IPQ96QF0 476 aaPredicted RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 CCT7Q99832 543 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 NUDT22Q9BRQ3 303 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 THTPAQ9BU02 230 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 EFCAB11Q9BUY7 163 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 LRRC61Q9BV99 259 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 RAB11FIP5Q9BXF6 653 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 MRPL1Q9BYD6 325 aaKnown RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 GSDMCQ9BYG8 508 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 OR10A4Q9H209 315 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 OR51B5Q9H339 312 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 ACTL8Q9H568 366 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 KIR3DX1Q9H7L2 352 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 IL1RL2Q9HB29 575 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 FANCEQ9HB96 536 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 BARX1Q9HBU1 254 aaPredicted RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 GCM1Q9NP62 436 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 SDR39U1Q9NRG7 319 aaPredicted RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 FKBP14Q9NWM8 211 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 NMRK1Q9NWW6 199 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 C1orf109Q9NX04 203 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 AKAP7Q9P0M2 348 aaPredicted RBP3.93□□□□□ -1.78
CD44-226ENST00000527889 DNAJB11Q9UBS4 358 aa3.93□□□□□ -1.78
CD44-226ENST00000527889 APOBEC3BQ9UH17 382 aaKnown RBP3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms