RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 RASAL1O95294 804 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 ETFAP13804 333 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 ZNF43P17038 809 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 TRAM1Q15629 374 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 LCTLQ6UWM7 567 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 OR13C3Q8NGS6 347 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 HYLS1Q96M11 299 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 STARD5Q9NSY2 213 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 C5AR2Q9P296 337 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 ZNF451Q9Y4E5 1061 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-215ENST00000496447 PRSS38A1L453 326 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 CD3GP09693 182 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 MSX1P28360 303 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 MRPS21P82921 87 aaKnown RBP12.47□□□□□ -0.41
PTPRF-215ENST00000496447 FAM78AQ5JUQ0 283 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 RAB12Q6IQ22 244 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 BLOC1S3Q6QNY0 202 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 LIPIQ6XZB0 460 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 WDR20Q8TBZ3 569 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 HOXB13Q92826 284 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-215ENST00000496447 NAT6Q93015 286 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 WACQ9BTA9 647 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 CWH43Q9H720 699 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 ZNF334Q9HCZ1 680 aaPredicted RBP12.47□□□□□ -0.41
PTPRF-215ENST00000496447 KCMF1Q9P0J7 381 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 DNMT3BQ9UBC3 853 aaKnown RBP12.47□□□□□ -0.41
PTPRF-215ENST00000496447 HCSTQ9UBK5 93 aa12.47□□□□□ -0.41
PTPRF-215ENST00000496447 HIDE1A8MVS5 230 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 INMT-MINDY4F8WBC2 141 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 ADAMTS4O75173 837 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 ANXA3P12429 323 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 TIMP2P16035 220 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 HOXB9P17482 250 aaPredicted RBP12.46□□□□□ -0.41
PTPRF-215ENST00000496447 ERVPABLB-1P60509 514 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 CDKN3Q16667 212 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 CST9Q5W186 159 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 ISCA2Q86U28 154 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 COMMD7Q86VX2 200 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 OR52E1Q8NGJ3 308 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 L3HYPDHQ96EM0 354 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 MS4A4EQ96PG1 132 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 SLC9B1P1A6NJY1 282 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 LAMP1P11279 417 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 POU3F4P49335 361 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 FAM122CQ6P4D5 195 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 CDHR3Q6ZTQ4 885 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 STOML3Q8TAV4 291 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 APIPQ96GX9 242 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 SLC45A3Q96JT2 553 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 CNN2Q99439 309 aaKnown RBP12.46□□□□□ -0.41
PTPRF-215ENST00000496447 ZNF576Q9H609 170 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 CDH20Q9HBT6 801 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 ENAMQ9NRM1 1142 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 NRXN3Q9Y4C0 1643 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 SLC22A31A6NKX4 558 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 GNRHRP30968 328 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 GJA4P35212 333 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 EIF5AL1Q6IS14 154 aaKnown RBP12.46□□□□□ -0.41
PTPRF-215ENST00000496447 CD200R1Q8TD46 325 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 URM1Q9BTM9 101 aaKnown RBP12.46□□□□□ -0.41
PTPRF-215ENST00000496447 DNAJC15Q9Y5T4 150 aa12.46□□□□□ -0.41
PTPRF-215ENST00000496447 E2F3O00716 465 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 FOXD2O60548 495 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-215ENST00000496447 FMO6PO60774 539 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 HPRP00739 348 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 CHRNB1P11230 501 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 FXYD6P3P58550 94 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 SH3BP2P78314 561 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 E2F1Q01094 437 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 PTCRAQ6ISU1 281 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-215ENST00000496447 FAM180BQ6P0A1 224 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 MDGA1Q8NFP4 955 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 OR52N2Q8NGI0 321 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 OR52E2Q8NGJ4 325 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 PFDN5Q99471 154 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF700Q9H0M5 742 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 TP63Q9H3D4 680 aaPredicted RBP12.46□□□□□ -0.42
PTPRF-215ENST00000496447 GSKIPQ9P0R6 139 aa12.46□□□□□ -0.42
PTPRF-215ENST00000496447 FXYD6-FXYD2A0A087WZ82 144 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 TRIM64BA6NI03 449 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 FASLGP48023 281 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CRISP1P54107 249 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 HNRNPA0Q13151 305 aaKnown RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 SHISA6Q6ZSJ9 500 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ZNF367Q7RTV3 350 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 DENND6BQ8NEG7 585 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 CASTOR1Q8WTX7 329 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 RHBDF1Q96CC6 855 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 FXYD6Q9H0Q3 95 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 NUDT15Q9NV35 164 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 RPH3AQ9Y2J0 694 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 NUMBLQ9Y6R0 609 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 BCAT2O15382 392 aaPredicted RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 GSTM2P28161 218 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 SFTPDP35247 375 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 SNU13P55769 128 aaKnown RBP12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ACTA2P62736 377 aa12.45□□□□□ -0.42
PTPRF-215ENST00000496447 ACTG2P63267 376 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms