RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 HAND2P61296 217 aa2.55□□□□□ -2
VPS50-219ENST00000495039 PAX2Q02962 417 aa2.55□□□□□ -2
VPS50-219ENST00000495039 WASHC5Q12768 1159 aa2.55□□□□□ -2
VPS50-219ENST00000495039 SMC1AQ14683 1233 aaKnown RBP2.55□□□□□ -2
VPS50-219ENST00000495039 SLC10A1Q14973 349 aa2.55□□□□□ -2
VPS50-219ENST00000495039 CCDC40Q4G0X9 1142 aa2.55□□□□□ -2
VPS50-219ENST00000495039 SEL1L2Q5TEA6 688 aa2.55□□□□□ -2
VPS50-219ENST00000495039 ADAMTSL5Q6ZMM2 481 aa2.55□□□□□ -2
VPS50-219ENST00000495039 TSEN54Q7Z6J9 526 aaKnown RBP2.55□□□□□ -2
VPS50-219ENST00000495039 GPBP1Q86WP2 473 aa2.55□□□□□ -2
VPS50-219ENST00000495039 ERICH1Q86X53 443 aa2.55□□□□□ -2
VPS50-219ENST00000495039 CHCHD4Q8N4Q1 142 aa2.55□□□□□ -2
VPS50-219ENST00000495039 LHX4Q969G2 390 aa2.55□□□□□ -2
VPS50-219ENST00000495039 ZNF799Q96GE5 643 aa2.55□□□□□ -2
VPS50-219ENST00000495039 C9orf85Q96MD7 179 aa2.55□□□□□ -2
VPS50-219ENST00000495039 RANBP9Q96S59 729 aa2.55□□□□□ -2
VPS50-219ENST00000495039 TSPAN18Q96SJ8 248 aa2.55□□□□□ -2
VPS50-219ENST00000495039 NDUFAF3Q9BU61 184 aa2.55□□□□□ -2
VPS50-219ENST00000495039 SIRPDQ9H106 197 aa2.55□□□□□ -2
VPS50-219ENST00000495039 SYTL2Q9HCH5 934 aa2.55□□□□□ -2
VPS50-219ENST00000495039 ANO10Q9NW15 660 aa2.55□□□□□ -2
VPS50-219ENST00000495039 IL19Q9UHD0 177 aa2.55□□□□□ -2
VPS50-219ENST00000495039 CCPG1Q9ULG6 757 aa2.55□□□□□ -2
VPS50-219ENST00000495039 FKBP7Q9Y680 259 aa2.55□□□□□ -2
VPS50-219ENST00000495039 TMEM89A2RUT3 159 aa2.54□□□□□ -2
VPS50-219ENST00000495039 CFAP73A6NFT4 308 aa2.54□□□□□ -2
VPS50-219ENST00000495039 MFSD2BA6NFX1 497 aa2.54□□□□□ -2
VPS50-219ENST00000495039 E7ENQ6 273 aa2.54□□□□□ -2
VPS50-219ENST00000495039 NPIPA2E9PIF3 369 aa2.54□□□□□ -2
VPS50-219ENST00000495039 PDLIM1O00151 329 aa2.54□□□□□ -2
VPS50-219ENST00000495039 STK17BO94768 372 aa2.54□□□□□ -2
VPS50-219ENST00000495039 GJB5O95377 273 aa2.54□□□□□ -2
VPS50-219ENST00000495039 IGSF6O95976 241 aa2.54□□□□□ -2
VPS50-219ENST00000495039 SLC4A1P02730 911 aa2.54□□□□□ -2
VPS50-219ENST00000495039 MT-ND3P03897 115 aa2.54□□□□□ -2
VPS50-219ENST00000495039 GIG44P09565 113 aaPredicted RBP2.54□□□□□ -2
VPS50-219ENST00000495039 HOXB7P09629 217 aa2.54□□□□□ -2
VPS50-219ENST00000495039 CCDC192P0DO97 292 aa2.54□□□□□ -2
VPS50-219ENST00000495039 STMN1P16949 149 aa2.54□□□□□ -2
VPS50-219ENST00000495039 SLC6A8P48029 635 aa2.54□□□□□ -2
VPS50-219ENST00000495039 ARHGDIBP52566 201 aa2.54□□□□□ -2
VPS50-219ENST00000495039 METAP1P53582 386 aa2.54□□□□□ -2
VPS50-219ENST00000495039 YBEYP58557 167 aaPredicted RBP2.54□□□□□ -2
VPS50-219ENST00000495039 ZNF85Q03923 595 aa2.54□□□□□ -2
VPS50-219ENST00000495039 ZKSCAN8Q15776 578 aaPredicted RBP2.54□□□□□ -2
VPS50-219ENST00000495039 ZNF528Q3MIS6 628 aa2.54□□□□□ -2
VPS50-219ENST00000495039 AGKQ53H12 422 aa2.54□□□□□ -2
VPS50-219ENST00000495039 IL23RQ5VWK5 629 aa2.54□□□□□ -2
VPS50-219ENST00000495039 LIPKQ5VXJ0 399 aa2.54□□□□□ -2
VPS50-219ENST00000495039 PRR5LQ6MZQ0 368 aa2.54□□□□□ -2
VPS50-219ENST00000495039 OLFM4Q6UX06 510 aa2.54□□□□□ -2
VPS50-219ENST00000495039 PAMR1Q6UXH9 720 aa2.54□□□□□ -2
VPS50-219ENST00000495039 WDR88Q6ZMY6 472 aa2.54□□□□□ -2
VPS50-219ENST00000495039 GCNT7Q6ZNI0 430 aa2.54□□□□□ -2
VPS50-219ENST00000495039 PRSS48Q7RTY5 328 aa2.54□□□□□ -2
VPS50-219ENST00000495039 GOLGA7Q7Z5G4 137 aa2.54□□□□□ -2
VPS50-219ENST00000495039 AMZ2Q86W34 360 aa2.54□□□□□ -2
VPS50-219ENST00000495039 CENPSQ8N2Z9 138 aa2.54□□□□□ -2
VPS50-219ENST00000495039 OR4F17Q8NGA8 305 aa2.54□□□□□ -2
VPS50-219ENST00000495039 OR52E1Q8NGJ3 308 aa2.54□□□□□ -2
VPS50-219ENST00000495039 TFB1MQ8WVM0 346 aaKnown RBP2.54□□□□□ -2
VPS50-219ENST00000495039 DLX4Q92988 240 aaPredicted RBP2.54□□□□□ -2
VPS50-219ENST00000495039 CCDC51Q96ER9 411 aa2.54□□□□□ -2
VPS50-219ENST00000495039 NSMCE2Q96MF7 247 aa2.54□□□□□ -2
VPS50-219ENST00000495039 OR4F4Q96R69 305 aa2.54□□□□□ -2
VPS50-219ENST00000495039 XPO4Q9C0E2 1151 aaKnown RBP2.54□□□□□ -2
VPS50-219ENST00000495039 ABCG8Q9H221 673 aa2.54□□□□□ -2
VPS50-219ENST00000495039 TNMDQ9H2S6 317 aa2.54□□□□□ -2
VPS50-219ENST00000495039 DBNDD1Q9H9R9 158 aa2.54□□□□□ -2
VPS50-219ENST00000495039 STARD5Q9NSY2 213 aa2.54□□□□□ -2
VPS50-219ENST00000495039 PURGQ9UJV8 347 aaKnown RBP2.54□□□□□ -2
VPS50-219ENST00000495039 RPH3AQ9Y2J0 694 aaPredicted RBP2.54□□□□□ -2
VPS50-219ENST00000495039 DHRS7Q9Y394 339 aa2.54□□□□□ -2
VPS50-219ENST00000495039 RNF115Q9Y4L5 304 aa2.54□□□□□ -2
VPS50-219ENST00000495039 LRIT2A6NDA9 550 aa2.53□□□□□ -2
VPS50-219ENST00000495039 A8MX80 341 aa2.53□□□□□ -2
VPS50-219ENST00000495039 RSPH10B2B2RC85 870 aa2.53□□□□□ -2
VPS50-219ENST00000495039 GPAA1O43292 621 aa2.53□□□□□ -2
VPS50-219ENST00000495039 LCMT2O60294 686 aaKnown RBP2.53□□□□□ -2
VPS50-219ENST00000495039 CXCL10P02778 98 aa2.53□□□□□ -2
VPS50-219ENST00000495039 WNT2P09544 360 aa2.53□□□□□ -2
VPS50-219ENST00000495039 RSPH10BP0C881 870 aa2.53□□□□□ -2
VPS50-219ENST00000495039 LAMP1P11279 417 aa2.53□□□□□ -2
VPS50-219ENST00000495039 ELK1P19419 428 aa2.53□□□□□ -2
VPS50-219ENST00000495039 SLC25A1P53007 311 aa2.53□□□□□ -2
VPS50-219ENST00000495039 HERVK_113P63132 956 aa2.53□□□□□ -2
VPS50-219ENST00000495039 ERVK-8P63133 956 aa2.53□□□□□ -2
VPS50-219ENST00000495039 MYBPC1Q00872 1141 aa2.53□□□□□ -2
VPS50-219ENST00000495039 IL9RQ01113 521 aa2.53□□□□□ -2
VPS50-219ENST00000495039 ZNF33BQ06732 778 aa2.53□□□□□ -2
VPS50-219ENST00000495039 EIF2B1Q14232 305 aaKnown RBP2.53□□□□□ -2
VPS50-219ENST00000495039 ZIC1Q15915 447 aa2.53□□□□□ -2
VPS50-219ENST00000495039 GSG1Q2KHT4 349 aa2.53□□□□□ -2
VPS50-219ENST00000495039 PARP6Q2NL67 630 aa2.53□□□□□ -2
VPS50-219ENST00000495039 ZNF699Q32M78 642 aa2.53□□□□□ -2
VPS50-219ENST00000495039 ACSF3Q4G176 576 aaPredicted RBP2.53□□□□□ -2
VPS50-219ENST00000495039 OR6B2Q6IFH4 312 aa2.53□□□□□ -2
VPS50-219ENST00000495039 TATDN1Q6P1N9 297 aa2.53□□□□□ -2
VPS50-219ENST00000495039 FAM159AQ6UWV7 190 aa2.53□□□□□ -2
VPS50-219ENST00000495039 Q8N9G6 341 aaPredicted RBP2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms