RNA–Protein interactions for RNA: ENST00000490557.1

HMGB1P38-201, Transcript of high mobility group box 1 pseudogene 38, humanhuman

BASIC

Gene HMGB1P38, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P38-201ENST00000490557 ATG4BQ9Y4P1 393 aa3.77□□□□□ -1.81
HMGB1P38-201ENST00000490557 TEX264Q9Y6I9 313 aa3.77□□□□□ -1.81
HMGB1P38-201ENST00000490557 TRABD2BA6NFA1 517 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SH2D1BO14796 132 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 PHOX2AO14813 284 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 BBOX1O75936 387 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 GOT2P00505 430 aaKnown RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 GSTA1P08263 222 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 CCND2P30279 289 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SOX6P35712 828 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 NOVP48745 357 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 IST1P53990 364 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 MFAP2P55001 183 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 RPS4XP62701 263 aaKnown RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 CCZ1BP86790 482 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 CCZ1P86791 482 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 NAAAQ02083 359 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 GABPB1Q06547 395 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 CHIT1Q13231 466 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SCGB2A2Q13296 93 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 MXD4Q14582 209 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 KARSQ15046 597 aaKnown RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 TCHHL1Q5QJ38 904 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 MARC1Q5VT66 337 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 WDR25Q64LD2 544 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 KRTAP5-11Q6L8G4 156 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 CWC27Q6UX04 472 aaKnown RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 MOB2Q70IA6 237 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 ARMCX2Q7L311 632 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 GPR142Q7Z601 462 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 CCDC148Q8NFR7 591 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SERAC1Q96JX3 654 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SAMD8Q96LT4 415 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 GPR137Q96N19 417 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SPATA13Q96N96 652 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 MCCC1Q96RQ3 725 aaPredicted RBP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 C19orf43Q9BQ61 176 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 TMEM245Q9H330 911 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 PIGVQ9NUD9 493 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SDAD1Q9NVU7 687 aaKnown RBP eCLIP3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 RSPH14Q9UHP6 348 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SNX6Q9UNH7 406 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 SLC6A5Q9Y345 797 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 NAALAD2Q9Y3Q0 740 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 KDRP35968 1356 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 PIK3R4Q99570 1358 aa3.76□□□□□ -1.81
HMGB1P38-201ENST00000490557 GON4LQ3T8J9 2241 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 TTC21BQ7Z4L5 1316 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 TRBV2A0A0J9YWF9 115 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 A0A1B0GVY2 172 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ARHGAP42A6NI28 874 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 LRRIQ4A6NIV6 560 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 SRPX2O60687 465 aaPredicted RBP3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 VENTXO95231 258 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 PRAMEF12O95522 483 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 AK1P00568 194 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 THY1P04216 161 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 APRTP07741 180 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 SNRPCP09234 159 aaKnown RBP3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 HMGCLP35914 325 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 NDST1P52848 882 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 MECOMQ03112 1051 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ZKSCAN8Q15776 578 aaPredicted RBP3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 Q1RN00 199 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 TIMM50Q3ZCQ8 353 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ATAD3BQ5T9A4 648 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 RHBDD2Q6NTF9 364 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ZYG11AQ6WRX3 759 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 CDH26Q8IXH8 852 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 CD177Q8N6Q3 437 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 CCNYQ8ND76 341 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 MNS1Q8NEH6 495 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 FLVCR1-AS1Q8TAF5 88 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 EXOC6Q8TAG9 804 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 TMEM186Q96B77 213 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 CNOT6LQ96LI5 555 aaKnown RBP3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 NSMCE2Q96MF7 247 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ZNF560Q96MR9 790 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 TPPP3Q9BW30 176 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 TEX13AQ9BXU3 409 aaPredicted RBP3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 DDX47Q9H0S4 455 aaKnown RBP3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ZBP1Q9H171 429 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 CLSTN2Q9H4D0 955 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ZNHIT6Q9NWK9 470 aaKnown RBP3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 NDUFA13Q9P0J0 144 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 SENP1Q9P0U3 644 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 COPS7AQ9UBW8 275 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ENTPD4Q9Y227 616 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 VSIG4Q9Y279 399 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 ASB3Q9Y575 518 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 NSD2O96028 1365 aa3.75□□□□□ -1.81
HMGB1P38-201ENST00000490557 CFAP73A6NFT4 308 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 E2F3O00716 465 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 EI24O14681 340 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 SSX5O60225 188 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 NEMFO60524 1076 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 ZNF253O75346 499 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 UMPSP11172 480 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 GLRA2P23416 452 aa3.74□□□□□ -1.81
HMGB1P38-201ENST00000490557 FCARP24071 287 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms