RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 BHLHB9Q6PI77 547 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 SLC36A4Q6YBV0 504 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 TMEM64Q6YI46 380 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 ZNF730Q6ZMV8 503 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 DGLUCYQ7Z3D6 616 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 CAMKK1Q8N5S9 505 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 ANKK1Q8NFD2 765 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 NUP43Q8NFH3 380 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 TTLQ8NG68 377 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 OR2L8Q8NGY9 312 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 GNPDA2Q8TDQ7 276 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 CHAC2Q8WUX2 184 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 SLC38A1Q9H2H9 487 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 PCDHGB2Q9Y5G2 931 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 DENND4AQ7Z401 1863 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 TFECO14948 347 aaPredicted RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 PRODHO43272 600 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 SNRNP200O75643 2136 aaKnown RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 IL1AP01583 271 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 KRT8P05787 483 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 CSNK2A2P19784 350 aaPredicted RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 PKLRP30613 574 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 MTNR1AP48039 350 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 BNC1Q01954 994 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 GPR50Q13585 617 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 GNA13Q14344 377 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 PDGFRLQ15198 375 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 LTB4RQ15722 352 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 C3orf38Q5JPI3 329 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 MRM1Q6IN84 353 aaKnown RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 RRM2BQ7LG56 351 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 DIRAS2Q96HU8 199 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 WDFY2Q96P53 400 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 MMP28Q9H239 520 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 TP63Q9H3D4 680 aaPredicted RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 C6orf106Q9H6K1 298 aaPredicted RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 POLMQ9NP87 494 aaPredicted RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 WBP1LQ9NX94 342 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 PRKAG2Q9UGJ0 569 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 APOBEC3BQ9UH17 382 aaKnown RBP16.85■□□□□ 0.29
VIM-206ENST00000487938 IL20RAQ9UHF4 553 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 SLC13A4Q9UKG4 626 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 ITGB1BP2Q9UKP3 347 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 CES1P1Q9UKY3 287 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 CHST2Q9Y4C5 530 aa16.85■□□□□ 0.29
VIM-206ENST00000487938 SCN3AQ9NY46 2000 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 SLC35F4A4IF30 521 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 FABP12A6NFH5 140 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 CASC3O15234 703 aaKnown RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 TRIM23P36406 574 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 ANXA11P50995 505 aaKnown RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 TGM3Q08188 693 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 RAB40BQ12829 278 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 PLK5Q496M5 336 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 TANGO2Q6ICL3 276 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 KIAA1211LQ6NV74 962 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 ZNF544Q6NX49 715 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 PSRC1Q6PGN9 363 aaPredicted RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 ZNF517Q6ZMY9 492 aaPredicted RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 GET4Q7L5D6 327 aaPredicted RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 GATAD2AQ86YP4 633 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 NKAIN4Q8IVV8 208 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 UBE2J2Q8N2K1 259 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 OR2L5Q8NG80 312 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 OR6F1Q8NGZ6 308 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 SETD6Q8TBK2 473 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 SFXN5Q8TD22 340 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 CHFRQ96EP1 664 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 KCTD7Q96MP8 289 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 WDR70Q9NW82 654 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 ATG2BQ96BY7 2078 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 EMC8O43402 210 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 FCMRO60667 390 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 UBXN7O94888 489 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 KAT7O95251 611 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 ALPPP05187 535 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 F3P13726 295 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 PEBP1P30086 187 aaKnown RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 SSTR4P31391 388 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 GJA4P35212 333 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 SOX18P35713 384 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 LRRC32Q14392 662 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 GLYR1Q49A26 553 aaPredicted RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 C6orf132Q5T0Z8 1188 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 SLC48A1Q6P1K1 146 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 OR2L3Q8NG85 312 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 OR56A1Q8NGH5 318 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 ELP4Q96EB1 424 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 FCRL4Q96PJ5 515 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 FGF20Q9NP95 211 aaPredicted RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 SF3B6Q9Y3B4 125 aaKnown RBP16.84■□□□□ 0.29
VIM-206ENST00000487938 STON1Q9Y6Q2 735 aa16.84■□□□□ 0.29
VIM-206ENST00000487938 NARSO43776 548 aaKnown RBP16.83■□□□□ 0.28
VIM-206ENST00000487938 CEACAM5P06731 702 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 CCNYL3P0C7X3 344 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 GNSP15586 552 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 MPIP34949 423 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 PRR5P85299 388 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 FABP5Q01469 135 aa16.83■□□□□ 0.28
VIM-206ENST00000487938 DMPKQ09013 629 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms