RNA–Protein interactions for RNA: ENST00000485947.1

VIM-205, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 1,139 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-205ENST00000485947 C6orf47O95873 294 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 LDLRP01130 860 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 PTPN6P29350 595 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 CDKN2CP42773 168 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 TDGF1P3P51864 188 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 SLC7A2P52569 658 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 MANFP55145 182 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 CORO7P57737 925 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 MLF1P58340 268 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 PLIN5Q00G26 463 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 CAPRIN1Q14444 709 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 OR1C1Q15619 314 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 ELAVL1Q15717 326 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 RUNDC3AQ59EK9 446 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 SAMD4BQ5PRF9 694 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 NANOGP8Q6NSW7 305 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 PGM2L1Q6PCE3 622 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 ULK2Q8IYT8 1036 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 APCDD1LQ8NCL9 501 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 OR4K14Q8NGD5 310 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 PSMA8Q8TAA3 256 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 DAZLQ92904 295 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 UTP4Q969X6 686 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 TMEM125Q96AQ2 219 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 VMP1Q96GC9 406 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 CDCP1Q9H5V8 836 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 NANOGQ9H9S0 305 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 SLC25A37Q9NYZ2 338 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 ADA2Q9NZK5 511 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 VAPAQ9P0L0 249 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 ERRFI1Q9UJM3 462 aaPredicted RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 CORO2BQ9UQ03 480 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 RRP15Q9Y3B9 282 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 L3MBTL1Q9Y468 752 aa15.78■□□□□ 0.12
VIM-205ENST00000485947 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.78■□□□□ 0.12
VIM-205ENST00000485947 GLOD5A6NK44 160 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 ENO4A6NNW6 628 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 MPIP34949 423 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 CYB561P49447 251 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 EEFSECP57772 596 aaKnown RBP15.77■□□□□ 0.12
VIM-205ENST00000485947 HBA1P69905 142 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 KRTCAP3Q53RY4 240 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 PIGGQ5H8A4 983 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 DNAJC14Q6Y2X3 702 aaPredicted RBP15.77■□□□□ 0.12
VIM-205ENST00000485947 ZNF621Q6ZSS3 439 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 MSRB3Q8IXL7 192 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 SLC15A3Q8IY34 581 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 FBXW8Q8N3Y1 598 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 MORN4Q8NDC4 146 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 UCN3Q969E3 161 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 CNRIP1Q96F85 164 aaPredicted RBP15.77■□□□□ 0.12
VIM-205ENST00000485947 AMDHD1Q96NU7 426 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 CPPED1Q9BRF8 314 aaPredicted RBP15.77■□□□□ 0.12
VIM-205ENST00000485947 SLC39A3Q9BRY0 314 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 LRFN1Q9P244 771 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 CLDN16Q9Y5I7 305 aa15.77■□□□□ 0.12
VIM-205ENST00000485947 EVPLLA8MZ36 301 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 CIB2O75838 187 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 SLITRK5O94991 958 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 GPR75O95800 540 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 IFI6P09912 130 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 UQCRC2P22695 453 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 HLCSP50747 726 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 GPR143P51810 404 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 NCBP2P52298 156 aaKnown RBP eCLIP15.76■□□□□ 0.11
VIM-205ENST00000485947 OC90Q02509 493 aaPredicted RBP15.76■□□□□ 0.11
VIM-205ENST00000485947 RBPJQ06330 500 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 STX4Q12846 297 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 GTDC1Q4AE62 458 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 SLC25A25Q6KCM7 469 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 GPALPP1Q8IXQ4 340 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 LRRC25Q8N386 305 aaPredicted RBP15.76■□□□□ 0.11
VIM-205ENST00000485947 OR8K3Q8NH51 312 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 OR14A16Q8NHC5 309 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 THAP3Q8WTV1 239 aaPredicted RBP15.76■□□□□ 0.11
VIM-205ENST00000485947 RELTQ969Z4 430 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 MOAP1Q96BY2 351 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 ZNF681Q96N22 645 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 GLIPR2Q9H4G4 154 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 RAD21L1Q9H4I0 556 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 CMTM6Q9NX76 183 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 PLEKHB1Q9UF11 243 aaPredicted RBP15.76■□□□□ 0.11
VIM-205ENST00000485947 CD300AQ9UGN4 299 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 CLCA3PQ9Y6N3 262 aa15.76■□□□□ 0.11
VIM-205ENST00000485947 NUP214P35658 2090 aaPredicted RBP15.75■□□□□ 0.11
VIM-205ENST00000485947 NME4O00746 187 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 NEURL1O76050 574 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 ZFAND5O76080 213 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 F10P00742 488 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 GSNP06396 782 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 SP1P08047 785 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 ABCB1P08183 1280 aaPredicted RBP15.75■□□□□ 0.11
VIM-205ENST00000485947 HSD17B1P14061 328 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 PORP16435 677 aaPredicted RBP15.75■□□□□ 0.11
VIM-205ENST00000485947 EFNA1P20827 205 aaPredicted RBP15.75■□□□□ 0.11
VIM-205ENST00000485947 ME2P23368 584 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 XKP51811 444 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 IGLV3-21P80748 117 aaPredicted RBP15.75■□□□□ 0.11
VIM-205ENST00000485947 FOLH1Q04609 750 aa15.75■□□□□ 0.11
VIM-205ENST00000485947 CEACAM7Q14002 265 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms