RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 YY1AP1Q9H869 796 aa9.45□□□□□ -0.9
USP39-215ENST00000481409 AKIRIN1Q9H9L7 192 aaPredicted RBP9.45□□□□□ -0.9
USP39-215ENST00000481409 CACYBPQ9HB71 228 aaKnown RBP9.45□□□□□ -0.9
USP39-215ENST00000481409 FOLH1BQ9HBA9 442 aa9.45□□□□□ -0.9
USP39-215ENST00000481409 HHATLQ9HCP6 504 aa9.45□□□□□ -0.9
USP39-215ENST00000481409 DCAF13Q9NV06 445 aaKnown RBP9.45□□□□□ -0.9
USP39-215ENST00000481409 ADPRHL2Q9NX46 363 aa9.45□□□□□ -0.9
USP39-215ENST00000481409 PRDM4Q9UKN5 801 aa9.45□□□□□ -0.9
USP39-215ENST00000481409 ANGPTL2Q9UKU9 493 aa9.45□□□□□ -0.9
USP39-215ENST00000481409 ZFHX2Q9C0A1 2572 aaPredicted RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 IGHV1-45A0A0A0MS14 117 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 C2orf92A0A1B0GVN3 265 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 FAM149AA5PLN7 773 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 ANKRD65E5RJM6 399 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SNPHO15079 494 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 MGRN1O60291 552 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 STX11O75558 287 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 PGM3O95394 542 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 HPP00738 406 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 CLPSP04118 112 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 PSMA4P25789 261 aaKnown RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 SSTR4P31391 388 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 DLSTP36957 453 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SLC26A5P58743 744 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 POU6F2P78424 691 aaPredicted RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 MRPS22P82650 360 aaKnown RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 PSG6Q00889 435 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 KPNB1Q14974 876 aaKnown RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 EXOSC7Q15024 291 aaKnown RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.44□□□□□ -0.9
USP39-215ENST00000481409 PLAG1Q6DJT9 500 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 HSDL2Q6YN16 418 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 DGAT2L6Q6ZPD8 337 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 FKBP9P1Q75LS8 142 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 CBLL1Q75N03 491 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 EIF3MQ7L2H7 374 aaKnown RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 DND1Q8IYX4 353 aaKnown RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 SHISA5Q8N114 240 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 CLEC4FQ8N1N0 589 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SLC15A4Q8N697 577 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 IL22RA1Q8N6P7 574 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 COX18Q8N8Q8 333 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SLC16A11Q8NCK7 471 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SLC38A5Q8WUX1 472 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 WDR60Q8WVS4 1066 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 FIG4Q92562 907 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SLC9A6Q92581 669 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 FAM162AQ96A26 154 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SLC35A4Q96G79 324 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 TMEM19Q96HH6 336 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 LCORQ96JN0 433 aaPredicted RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 WDR77Q9BQA1 342 aaPredicted RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 TRIM8Q9BZR9 551 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 OR8D2Q9GZM6 311 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 HOXD1Q9GZZ0 328 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 PCDHAC1Q9H158 963 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SERHL2Q9H4I8 314 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 ARMC7Q9H6L4 198 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 MAGIXQ9H6Y5 334 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 DCLRE1BQ9H816 532 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 MTHFD2LQ9H903 347 aaPredicted RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 MMP25Q9NPA2 562 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 EQTNQ9NQ60 294 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 EGFL7Q9UHF1 273 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 GPR55Q9Y2T6 319 aaPredicted RBP9.44□□□□□ -0.9
USP39-215ENST00000481409 IFT52Q9Y366 437 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 HS3ST3B1Q9Y662 390 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 SDK2Q58EX2 2172 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 GVINP1Q7Z2Y8 2422 aa9.44□□□□□ -0.9
USP39-215ENST00000481409 DSPPQ9NZW4 1301 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 NSG1A0A0A6YYJ2 146 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 TEX51A0A1B0GUA7 166 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 PMS2P1A4D2B8 440 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 OR2W5A6NFC9 320 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 A8MVJ9 347 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 PEX12O00623 359 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 SLC28A2O43868 658 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 ZFAND5O76080 213 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 BCHEP06276 602 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 ACP2P11117 423 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 FCGR1AP12314 374 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 NAGAP17050 411 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 ENDOUP21128 410 aaKnown RBP9.43□□□□□ -0.9
USP39-215ENST00000481409 SLC7A1P30825 629 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 GABRA3P34903 492 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 PIGAP37287 484 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 EFNA3P52797 238 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 NRG3P56975 720 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 SELENOWP63302 87 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 PCOLCEQ15113 449 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 EBPQ15125 230 aaKnown RBP9.43□□□□□ -0.9
USP39-215ENST00000481409 DUSP5Q16690 384 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 DECR1Q16698 335 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 TBC1D25Q3MII6 688 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 FAM98BQ52LJ0 330 aaKnown RBP9.43□□□□□ -0.9
USP39-215ENST00000481409 DCST2Q5T1A1 773 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 SHISA6Q6ZSJ9 500 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 LANCL3Q6ZV70 420 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 SPATA24Q86W54 205 aa9.43□□□□□ -0.9
USP39-215ENST00000481409 SPPL2CQ8IUH8 684 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms