RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 FAM47EQ6ZV65 393 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 RPS27LQ71UM5 84 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 COMMD6Q7Z4G1 85 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 FGD2Q7Z6J4 655 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 DOLPP1Q86YN1 238 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 TICAM1Q8IUC6 712 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC22A9Q8IVM8 553 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 CHERPQ8IWX8 916 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 METTL4Q8N3J2 472 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM109AQ8N4B1 249 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 OR4K14Q8NGD5 310 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ACMSDQ8TDX5 336 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 TRPC4APQ8TEL6 797 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SELENOMQ8WWX9 145 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SPACA9Q96E40 222 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 DMRTA2Q96SC8 542 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 RHOXF2Q9BQY4 288 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 MRPL1Q9BYD6 325 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 TTTY12Q9BZ98 90 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 WWTR1Q9GZV5 400 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 DEFB127Q9H1M4 99 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ZDHHC11Q9H8X9 412 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 IL1RL2Q9HB29 575 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 FARSBQ9NSD9 589 aaKnown RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 NMRK1Q9NWW6 199 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 TEX10Q9NXF1 929 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 TMEM216Q9P0N5 145 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 PSMC3IPQ9P2W1 217 aaPredicted RBP6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 FETUBQ9UGM5 382 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 TRPS1Q9UHF7 1281 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC12A4Q9UP95 1085 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 STK38LQ9Y2H1 464 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 HCFC1P51610 2035 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 ADGRG4Q8IZF6 3080 aa6.26□□□□□ -1.41
CCDC88A-213ENST00000476903 C2orf92A0A1B0GVN3 265 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 GOLGA6L10A6NI86 522 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 WASHC1A8K0Z3 465 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CAPN14A8MX76 684 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 BCKDKO14874 412 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNHIT1O43257 154 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 DLX3O60479 287 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF354AO60765 605 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 GLSO94925 669 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 OR4F21O95013 312 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CLDN14O95500 239 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 NADKO95544 446 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 PDYNP01213 254 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 KRT6AP02538 564 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 KRT6BP04259 564 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM153BP0C7A2 387 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CCL3P10147 92 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 HSD3B1P14060 373 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 COX6B1P14854 86 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TSPAN8P19075 237 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 IMPDH1P20839 514 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 NT5EP21589 574 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 ATP5F1P24539 256 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 HSD3B2P26439 372 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 HSD17B3P37058 310 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 KRT6CP48668 564 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 DNASE1L1P49184 302 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 XKP51811 444 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TRA2BP62995 288 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 GALNT1Q10472 559 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CSTF3Q12996 717 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC29A2Q14542 456 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 EBPQ15125 230 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 HYAL4Q2M3T9 481 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 FAM153CQ494X1 144 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 SLC22A10Q63ZE4 541 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TMEM211Q6ICI0 200 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 RINLQ6ZS11 566 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 GPRIN3Q6ZVF9 776 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 USP51Q70EK9 711 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TAGAPQ8N103 731 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 FBXW8Q8N3Y1 598 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TMEM251Q8N6I4 163 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CDYL2Q8N8U2 506 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 EIF1ADQ8N9N8 165 aaKnown RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 OR7G1Q8NGA0 311 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 DOK4Q8TEW6 326 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 PAQR8Q8TEZ7 354 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CA5BP1Q8WTZ4 195 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 UCN3Q969E3 161 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 MBD6Q96DN6 1003 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TMEM237Q96Q45 408 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 ZNF382Q96SR6 550 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 FAIM2Q9BWQ8 316 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TXLNGYQ9BZA5 131 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 TP63Q9H3D4 680 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 LDAHQ9H6V9 325 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CXorf21Q9HAI6 301 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 SH2D2AQ9NP31 389 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 COQ3Q9NZJ6 369 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 CNIH4Q9P003 139 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 VPS29Q9UBQ0 182 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 PSME2Q9UL46 239 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 BOKQ9UMX3 212 aaPredicted RBP6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 PCDHA9Q9Y5H5 950 aa6.25□□□□□ -1.41
CCDC88A-213ENST00000476903 INTS1Q8N201 2190 aaKnown RBP6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms