RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ALG9Q9H6U8 611 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ELL3Q9HB65 397 aaPredicted RBP2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ADGRL4Q9HBW9 690 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 NGBQ9NPG2 151 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 ACTR3BQ9P1U1 418 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 SEC14L4Q9UDX3 406 aa2.26□□□□□ -2.05
CCDC88A-212ENST00000474059 H3BMH7 237 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 CFLARO15519 480 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 BUB1O43683 1085 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 RANBP6O60518 1105 aaKnown RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 B3GALNT1O75752 331 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 RENP00797 406 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 GSTA1P08263 222 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM200BP0CF97 657 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 HSD17B1P14061 328 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 ARF4P18085 180 aaPredicted RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 PPP2R1BP30154 601 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 CHRNA3P32297 505 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 SAA4P35542 130 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 SLC7A2P52569 658 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 GMFBP60983 142 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 GSTO1P78417 241 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 SMC1AQ14683 1233 aaKnown RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 INAQ16352 499 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 ACSF3Q4G176 576 aaPredicted RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 LDLRAP1Q5SW96 308 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 TAF3Q5VWG9 929 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 REP15Q6BDI9 236 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 GOLGA7Q7Z5G4 137 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 SYVN1Q86TM6 617 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 RANBP3LQ86VV4 465 aaPredicted RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 GPBP1Q86WP2 473 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 LRRC49Q8IUZ0 686 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 ANKRD20A12PQ8NF67 263 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 OR52B4Q8NGK2 314 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 FCGR1BQ92637 280 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 DLX4Q92988 240 aaPredicted RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 NCLNQ969V3 563 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 PHYHIPLQ96FC7 376 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 C19orf43Q9BQ61 176 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 APOOQ9BUR5 198 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 PDFQ9HBH1 243 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 CLEC5AQ9NY25 188 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 RCOR3Q9P2K3 495 aaPredicted RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 BCAP29Q9UHQ4 241 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 SLC9A8Q9Y2E8 581 aa2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 MTF2Q9Y483 593 aaPredicted RBP2.25□□□□□ -2.05
CCDC88A-212ENST00000474059 ABCC4O15439 1325 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 NPIPA5A0A0B4J1W7 369 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 A0A0J9YVX5 310 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 FOXI3A8MTJ6 420 aaPredicted RBP2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 NPIPA5E9PKD4 350 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 MCF2LO15068 1137 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 VENTXO95231 258 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 TRIM16O95361 564 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 IGSF6O95976 241 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 PTPN6P29350 595 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 VCPP55072 806 aaKnown RBP2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 KRTAP10-10P60014 251 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 HAND2P61296 217 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 HERVK_113P63132 956 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ERVK-8P63133 956 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 CD226Q15762 336 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 C17orf58Q2M2W7 97 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 PARP6Q2NL67 630 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 VWA2Q5GFL6 755 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 NHLRC3Q5JS37 347 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF506Q5JVG8 444 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 LINC00242Q5T6M2 205 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 C12orf60Q5U649 245 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 FAM219BQ5XKK7 198 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ABRAXAS1Q6UWZ7 409 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 APOOLQ6UXV4 268 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 UNC5DQ6UXZ4 953 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ADAMTSL5Q6ZMM2 481 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 GET4Q7L5D6 327 aaPredicted RBP2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ARFGAP2Q8N6H7 521 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 OR4F17Q8NGA8 305 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 OR52J3Q8NH60 311 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 WDR36Q8NI36 951 aaKnown RBP2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 FLVCR1-AS1Q8TAF5 88 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ITLN1Q8WWA0 313 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 BADQ92934 168 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 MCHR2Q969V1 340 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 OR4F4Q96R69 305 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 TTYH2Q9BSA4 534 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ERVK-6Q9BXR3 956 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 TEX13BQ9BXU2 312 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ROPN1Q9HAT0 212 aaPredicted RBP2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 YAE1D1Q9NRH1 226 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 TAS2R3Q9NYW6 316 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 MBD2Q9UBB5 411 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 P2RX2Q9UBL9 471 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 MLXQ9UH92 298 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 CIDEBQ9UHD4 219 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 ZNF490Q9ULM2 529 aaPredicted RBP2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 FZR1Q9UM11 496 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 MRPL11Q9Y3B7 192 aaKnown RBP2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 FKBP7Q9Y680 259 aa2.24□□□□□ -2.05
CCDC88A-212ENST00000474059 CUX2O14529 1486 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms