RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 OR2M4Q96R27 311 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 MED17Q9NVC6 651 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 PXDNQ92626 1479 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CDK4P11802 303 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CDK5R2Q13319 367 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 OR6K2Q8NGY2 324 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 MVB12BQ9H7P6 319 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 OSER1Q9NX31 292 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 ETV7Q9Y603 341 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CXorf49A8MYA2 514 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 SMLR1H3BR10 107 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CLN5O75503 358 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CPT2P23786 658 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 KCT2Q8NC54 265 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM185AQ8NFB2 350 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF461Q8TAF7 563 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 ZCCHC10Q8TBK6 192 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 RBCK1Q9BYM8 510 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 SDR39U1Q9NRG7 319 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 HES2Q9Y543 173 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 HSD17B7P56937 341 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 DBPQ10586 325 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 PCGF3Q3KNV8 242 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 FAM182AQ5T1J6 154 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM150AQ86TG1 271 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 LRRC25Q8N386 305 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 GLYATL2Q8WU03 294 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 SIGLEC10Q96LC7 697 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 INTS6Q9UL03 887 aaKnown RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 PRELID3BQ9Y3B1 194 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 ONECUT3O60422 494 aaPredicted RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM127O75204 238 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 RPS15AP62244 130 aaKnown RBP12.69□□□□□ -0.38
COL6A3-209ENST00000472056 RAB30Q15771 203 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 KCNJ8Q15842 424 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 MICAQ29983 383 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 NPAS4Q8IUM7 802 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 NRSN1Q8IZ57 195 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 OR5AK2Q8NH90 309 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 ZDHHC1Q8WTX9 485 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TFAP2BQ92481 460 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 AIG1Q9NVV5 245 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CLEC4EQ9ULY5 219 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TP53TG5Q9Y2B4 290 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 PYCR1P32322 319 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CLCNKBP51801 687 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 MADCAM1Q13477 382 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM31Q5JXX7 168 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 SERINC5Q86VE9 423 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 OR9A4Q8NGU2 314 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 CHAC2Q8WUX2 184 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 FRZBQ92765 325 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 GALPQ9UBC7 116 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 B4GALT7Q9UBV7 327 aa12.69□□□□□ -0.38
COL6A3-209ENST00000472056 RFXAPO00287 272 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 RAB35Q15286 201 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 SMIM15Q7Z3B0 74 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 FBXO15Q8NCQ5 510 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 OR9I1Q8NGQ6 314 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 GTF2H4Q92759 462 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 TMEM74Q96NL1 305 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 DNMT3AQ9Y6K1 912 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 KCNK2O95069 426 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CHRM5P08912 532 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 EIF2B1Q14232 305 aaKnown RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 C1orf94Q6P1W5 598 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 RAB39BQ96DA2 213 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 C10orf90Q96M02 699 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 WIF1Q9Y5W5 379 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 OTOL1A6NHN0 477 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF43P17038 809 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ERVK-25P63136 954 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 AVPI1Q5T686 147 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 OR10R2Q8NGX6 335 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CERKQ8TCT0 537 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 SGTBQ96EQ0 304 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CNTNAP3Q9BZ76 1288 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 LIN28AQ9H9Z2 209 aaKnown RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 PLCXD1Q9NUJ7 323 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ATRNL1Q5VV63 1379 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 C5P01031 1676 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 A8MV72 311 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 KDELR3O43731 214 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 DUSP11O75319 330 aaKnown RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 C6orf47O95873 294 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 PI4KAP42356 2102 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 BDKRB1P46663 353 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CXCL17Q6UXB2 119 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CERS5Q8N5B7 392 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 OR6N1Q8NGY5 312 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 KLHL42Q9P2K6 505 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 PCDHGA5Q9Y5G8 931 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 TOGARAM1Q9Y4F4 1720 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ZNF536O15090 1300 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 TUBAL3A6NHL2 446 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 SIX3O95343 332 aaPredicted RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 ALDOAP04075 364 aaKnown RBP12.68□□□□□ -0.38
COL6A3-209ENST00000472056 DPEP1P16444 411 aa12.68□□□□□ -0.38
COL6A3-209ENST00000472056 CD52P31358 61 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms