RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 FKBP10Q96AY3 582 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 FBXL20Q96IG2 436 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 VSTM2LQ96N03 204 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 PTCHD1Q96NR3 888 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 NR1H4Q96RI1 486 aaPredicted RBP8.74□□□□□ -1.01
VPS52-216ENST00000471309 PIP5K1AQ99755 562 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 RBM4BQ9BQ04 359 aaKnown RBP8.74□□□□□ -1.01
VPS52-216ENST00000471309 RBM4Q9BWF3 364 aaKnown RBP8.74□□□□□ -1.01
VPS52-216ENST00000471309 YIPF2Q9BWQ6 316 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 PINK1Q9BXM7 581 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 ANKRD60Q9BZ19 345 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 AMBRA1Q9C0C7 1298 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 ZNF350Q9GZX5 532 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 FOLH1BQ9HBA9 442 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 POLE3Q9NRF9 147 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 C14orf105Q9NVL8 296 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 SH3GLB1Q9Y371 365 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 SAMHD1Q9Y3Z3 626 aaKnown RBP8.74□□□□□ -1.01
VPS52-216ENST00000471309 HEMK1Q9Y5R4 338 aaPredicted RBP8.74□□□□□ -1.01
VPS52-216ENST00000471309 ENPP4Q9Y6X5 453 aa8.74□□□□□ -1.01
VPS52-216ENST00000471309 RP1P56715 2156 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 OR2W5A6NFC9 320 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 EFCAB7A8K855 629 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 C17orf105B2RV13 164 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 DYRK3O43781 588 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 KIAA0513O60268 411 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 CPNE3O75131 537 aaKnown RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 ZIC2O95409 532 aaPredicted RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 CLPSP04118 112 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 IFNA16P05015 189 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 THBS1P07996 1170 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 RPSAP08865 295 aaKnown RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 THRBP10828 461 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 RHCEP18577 417 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 RPS4Y1P22090 263 aaKnown RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 RRM2P31350 389 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 SSTR4P31391 388 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 OR1E2P47887 323 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 PSG6Q00889 435 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 CHRNEQ04844 493 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 MERTKQ12866 999 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ILKQ13418 452 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 PUM1Q14671 1186 aaKnown RBP eCLIP8.73□□□□□ -1.01
VPS52-216ENST00000471309 SF3A2Q15428 464 aaKnown RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 NKAIN1Q4KMZ8 207 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ZNF311Q5JNZ3 666 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 OTUD3Q5T2D3 398 aaPredicted RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 MFSD4BQ5TF39 518 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 AP1ARQ63HQ0 302 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ZNF385CQ66K41 422 aaPredicted RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 RBM44Q6ZP01 1051 aaKnown RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 OLIG3Q7RTU3 272 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 CARM1Q86X55 608 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ZNF619Q8N2I2 560 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ZNF615Q8N8J6 731 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 OR4C15Q8NGM1 316 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 GPR151Q8TDV0 419 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 DOK4Q8TEW6 326 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 PTPMT1Q8WUK0 201 aaPredicted RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 TFAP2CQ92754 450 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 TSLPQ969D9 159 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 CLIP3Q96DZ5 547 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 SDF2Q99470 211 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 PSD2Q9BQI7 771 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 LRFN3Q9BTN0 628 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ADI1Q9BV57 179 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 CNPPD1Q9BV87 410 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 EDEM2Q9BV94 578 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 RSPO3Q9BXY4 272 aaPredicted RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 SAP130Q9H0E3 1048 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 MTHFD2LQ9H903 347 aaPredicted RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 CACYBPQ9HB71 228 aaKnown RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 TMEM9BQ9NQ34 198 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 SLC22A11Q9NSA0 550 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 OCIAD1Q9NX40 245 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 CTSFQ9UBX1 484 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 PRODH2Q9UF12 536 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 KCND3Q9UK17 655 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ERVK-19Q9WJR5 959 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 SLC9A8Q9Y2E8 581 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 IFT52Q9Y366 437 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 WDR45Q9Y484 360 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 PCDHGA8Q9Y5G5 932 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 MAGED1Q9Y5V3 778 aaPredicted RBP8.73□□□□□ -1.01
VPS52-216ENST00000471309 LYVE1Q9Y5Y7 322 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 U3KQV3 271 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 MUC6Q6W4X9 2439 aa8.73□□□□□ -1.01
VPS52-216ENST00000471309 ARRDC5A6NEK1 342 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 AGAP5A6NIR3 686 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 B4E171 279 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 H0YAE9 185 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 HRKO00198 91 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 TNFRSF11BO00300 401 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 POLR1CO15160 346 aaPredicted RBP8.72□□□□□ -1.01
VPS52-216ENST00000471309 BRINP1O60477 761 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 FCMRO60667 390 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 LRP3O75074 770 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 CBFA2T3O75081 653 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 STX11O75558 287 aa8.72□□□□□ -1.01
VPS52-216ENST00000471309 EPPINO95925 133 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms