RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 SH3BGRL2Q9UJC5 107 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 CES1P1Q9UKY3 287 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SNX8Q9Y5X2 465 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 INTS1Q8N201 2190 aaKnown RBP11.27□□□□□ -0.61
PTPRF-208ENST00000437607 DNAJC13O75165 2243 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF407Q9C0G0 2248 aa11.27□□□□□ -0.61
PTPRF-208ENST00000437607 IGHV3-20A0A0C4DH32 117 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 MYO1GB0I1T2 1018 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 C19orf84I3L1E1 186 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 SCN2BO60939 215 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 CRYABP02511 175 aaKnown RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 PORP16435 677 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 PPIBP23284 216 aaKnown RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 PTGER4P35408 488 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 CHI3L1P36222 383 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 CDKN2CP42773 168 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 ST13P50502 369 aaKnown RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 XKP51811 444 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 SLC7A2P52569 658 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 HBA1P69905 142 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 GAB1Q13480 694 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 MLC1Q15049 377 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 CEBPEQ15744 281 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 GTDC1Q4AE62 458 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF621Q6ZSS3 439 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 LANCL3Q6ZV70 420 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF551Q7Z340 670 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 GDF7Q7Z4P5 450 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 OR4N5Q8IXE1 308 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF295-AS1Q8N0V1 137 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 KIF2BQ8N4N8 673 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 UCN3Q969E3 161 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 DGAT2Q96PD7 388 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 HOPXQ9BPY8 73 aaPredicted RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 SLC39A3Q9BRY0 314 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 SLC35A5Q9BS91 424 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 VN1R1Q9GZP7 353 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 PAIP1Q9H074 479 aaKnown RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 GLIPR2Q9H4G4 154 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 LANCL2Q9NS86 450 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 TAS2R1Q9NYW7 299 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 STMN3Q9NZ72 180 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 ADA2Q9NZK5 511 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 SUCOQ9UBS9 1254 aaKnown RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 MKL2Q9ULH7 1088 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 PRPF19Q9UMS4 504 aaKnown RBP11.26□□□□□ -0.61
PTPRF-208ENST00000437607 CORO2BQ9UQ03 480 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 L3MBTL1Q9Y468 752 aa11.26□□□□□ -0.61
PTPRF-208ENST00000437607 OR2W5A6NFC9 320 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 WASHC1A8K0Z3 465 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 DYRK3O43781 588 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 CTNSO60931 367 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 DNAJC8O75937 253 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 SEC24DO94855 1032 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 SLITRK5O94991 958 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 IFNA16P05015 189 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ATP1B1P05026 303 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 GSNP06396 782 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ZCCHC18P0CG32 403 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 MAOAP21397 527 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 NT5EP21589 574 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 UQCRC2P22695 453 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 CPOXP36551 454 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 CDK9P50750 372 aaKnown RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 PRR5P85299 388 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 LTB4RQ15722 352 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 C3AR1Q16581 482 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 PRSS53Q2L4Q9 553 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF750Q32MQ0 723 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF766Q5HY98 468 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ABHD17BQ5VST6 288 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 H3F3CQ6NXT2 135 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 BHLHB9Q6PI77 547 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 TMEM107Q6UX40 140 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 TMEM64Q6YI46 380 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 GALNT12Q8IXK2 581 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 CCDC116Q8IYX3 515 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ST13P4Q8IZP2 240 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 OR8J3Q8NGG0 315 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 OR56A1Q8NGH5 318 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 OR9A2Q8NGT5 310 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 OR5AK3PQ8NH89 298 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 GOT1L1Q8NHS2 421 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 SUN3Q8TAQ9 357 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 SFXN5Q8TD22 340 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ANKRD9Q96BM1 317 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 MOAP1Q96BY2 351 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 ZNF681Q96N22 645 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 PTCHD1Q96NR3 888 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 SIGLEC12Q96PQ1 595 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 RAB3IPQ96QF0 476 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 SH3GL1Q99961 368 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 CPPED1Q9BRF8 314 aaPredicted RBP11.25□□□□□ -0.61
PTPRF-208ENST00000437607 HES7Q9BYE0 225 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 RAD21L1Q9H4I0 556 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 RUBCNLQ9H714 662 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 CXorf36Q9H7Y0 433 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 CHST11Q9NPF2 352 aa11.25□□□□□ -0.61
PTPRF-208ENST00000437607 DDX18Q9NVP1 670 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms