RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TTC9Q92623 222 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 GNPNAT1Q96EK6 184 aaPredicted RBP6.86□□□□□ -1.31
VPS53-204ENST00000437048 CASD1Q96PB1 797 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 SMDT1Q9H4I9 107 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 TP53TG5Q9Y2B4 290 aa6.86□□□□□ -1.31
VPS53-204ENST00000437048 TRBV2A0A0J9YWF9 115 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MEIS2O14770 477 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 PLATP00750 562 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZNF43P17038 809 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 LAG3P18627 525 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 PRPH2P23942 346 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 DAOAP59103 153 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 KLF1Q13351 362 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 BCL2L15Q5TBC7 163 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 SLC8B1Q6J4K2 584 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 SLC7A6Q92536 515 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 TBC1D20Q96BZ9 403 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CRLF2Q9HC73 371 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZNF586Q9NXT0 402 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 UBR1Q8IWV7 1749 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 FAM155AB1AL88 458 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 PIPP12273 146 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 RAC2P15153 192 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 BMXP51813 675 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 GINS1Q14691 196 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 SPIN3Q5JUX0 258 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZC3H14Q6PJT7 736 aaKnown RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 TREML1Q86YW5 311 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 NHLRC2Q8NBF2 726 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 OR5L2Q8NGL0 311 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 OSMRQ99650 979 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CTRCQ99895 268 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 NMNAT1Q9HAN9 279 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 TUBG2Q9NRH3 451 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 RNF215Q9Y6U7 377 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 YDJCA8MPS7 323 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 DPM1O60762 260 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MAT2AP31153 395 aaKnown RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 OPRL1P41146 370 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 BDH1Q02338 343 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 AMHR2Q16671 573 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZNF678Q5SXM1 525 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MFSD3Q96ES6 412 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 LIN7BQ9HAP6 207 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 C2orf78A6NCI8 922 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 SLC16A6O15403 523 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 GPR68Q15743 365 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZNF792Q3KQV3 632 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 TMEM244Q5VVB8 128 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 OR5D14Q8NGL3 314 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 SPTSSAQ969W0 71 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CDKN2AIPNLQ96HQ2 116 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 PCDHA2Q9Y5H9 948 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CA12O43570 354 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 RAF1P04049 648 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CYP27C1Q4G0S4 372 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 NANOS1Q8WY41 292 aaKnown RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 RPS10P5Q9NQ39 176 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 GSKIPQ9P0R6 139 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 DEC1Q9P2X7 70 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 E9PI62 339 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZNF780AO75290 641 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 ANXA7P20073 488 aaKnown RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 KLRK1P26718 216 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MTNR1BP49286 362 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 WSCD1Q658N2 575 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 OR1J1Q8NGS3 322 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 GPR150Q8NGU9 434 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 C9J4A7 227 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 TCEA1P23193 301 aaKnown RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 SHMT2P34897 504 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 GCGRP47871 477 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 NDUFV1P49821 464 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ZNF133P52736 654 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 PPP1R26Q5T8A7 1209 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 LIPKQ5VXJ0 399 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 TMUB2Q71RG4 321 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 C3orf58Q8NDZ4 430 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 FAM83FQ8NEG4 500 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 MR1Q95460 341 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 NAA11Q9BSU3 229 aaPredicted RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 LAMP3Q9UQV4 416 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 OR6C65A6NJZ3 312 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 A8MVM7 634 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ARPC5O15511 151 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ANGPTL7O43827 346 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CDK5R2Q13319 367 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MSS51Q4VC12 460 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 MTFR2Q6P444 385 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 RHBDF2Q6PJF5 856 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 DHRS4L2Q6PKH6 230 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 ABHD15Q6UXT9 468 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 TMPRSS12Q86WS5 348 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 CADM2Q8N3J6 435 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 VGLL2Q8N8G2 317 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 SORCS1Q8WY21 1168 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 RBPMSQ93062 196 aaKnown RBP6.85□□□□□ -1.31
VPS53-204ENST00000437048 TMEM18Q96B42 140 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 PKP4Q99569 1192 aa6.85□□□□□ -1.31
VPS53-204ENST00000437048 LMF2Q9BU23 707 aaKnown RBP6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms