RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 CLIC3O95833 236 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 GP1BBP13224 206 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF136P52737 540 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 SORDQ00796 357 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 L3HYPDHQ96EM0 354 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 FUBP3Q96I24 572 aaKnown RBP eCLIP12.3□□□□□ -0.44
COL6A3-206ENST00000409809 UHRF2Q96PU4 802 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 TM6SF2Q9BZW4 377 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 PTGES2Q9H7Z7 377 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 NOX3Q9HBY0 568 aa12.3□□□□□ -0.44
COL6A3-206ENST00000409809 C9JVG2 144 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 K7EPK0 472 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 RNF225M0QZC1 329 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GATCO43716 136 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF623O75123 536 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ASAH1Q13510 395 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 MICAQ29983 383 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SERPINA12Q8IW75 414 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 FAM71E2Q8N5Q1 922 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 OR5P2Q8WZ92 322 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 PCED1AQ9H1Q7 454 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SLC6A17Q9H1V8 727 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 OR6C2Q9NZP2 312 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF223Q9UK11 482 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 HEATR1Q9H583 2144 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 MSMO1Q15800 293 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 THOC6Q86W42 341 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 MSI2Q96DH6 328 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ELF4Q99607 663 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 HDHD5Q9BXW7 423 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 MMP28Q9H239 520 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ATP13A2Q9NQ11 1180 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GPR89AB7ZAQ6 455 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 MEIS2O14770 477 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 OR2F2O95006 317 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GPR89BP0CG08 455 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 WEE1P30291 646 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 OR2F1Q13607 317 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GFOD2Q3B7J2 385 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 STT3BQ8TCJ2 826 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 CRB3Q9BUF7 120 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 CD8B2A6NJW9 211 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 UGDHO60701 494 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 CD8BP10966 210 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 CPN1P15169 458 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 PFKLP17858 780 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 DDCP20711 480 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 AKR1C2P52895 323 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SLBPQ14493 270 aaKnown RBP eCLIP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GIMAP1Q8WWP7 306 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 TSSK2Q96PF2 358 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ELP3Q9H9T3 547 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 RDH14Q9HBH5 336 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 PRODH2Q9UF12 536 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ARFGEF2Q9Y6D5 1785 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 TMEM72A0PK05 275 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GIFP27352 417 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 MRPS6P82932 125 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ADIPOR2Q86V24 386 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF679Q8IYX0 411 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 JOSD2Q8TAC2 188 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 TMEM18Q96B42 140 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ALG8Q9BVK2 526 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 DUSP22Q9NRW4 184 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 CLEC4EQ9ULY5 219 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 PPP5D1E7EU14 171 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 VIPP01282 170 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 JUNP05412 331 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SMIM6P0DI80 62 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ZP3P21754 424 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 CPT2P23786 658 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 BLKP51451 505 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 CRYBB1P53674 252 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SLC29A4Q7RTT9 530 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GGHQ92820 318 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 TP53TG5Q9Y2B4 290 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 V9GYS6 101 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 ARPC1BO15143 372 aaKnown RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 GPRIN2O60269 458 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 JUNBP17275 347 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 LYRM7Q5U5X0 104 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 OR4F3Q6IEY1 312 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SHFQ7M4L6 423 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SULF2Q8IWU5 870 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 FBXO22Q8NEZ5 403 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 OR5AK2Q8NH90 309 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 SDR39U1Q9NRG7 319 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-206ENST00000409809 KCNIP1Q9NZI2 227 aa12.29□□□□□ -0.44
COL6A3-206ENST00000409809 UBR1Q8IWV7 1749 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 C2orf78A6NCI8 922 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 BUD23O43709 281 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 PSMB1P20618 241 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 RPL13AP40429 203 aaKnown RBP12.28□□□□□ -0.44
COL6A3-206ENST00000409809 CASP9P55211 416 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 TNK1Q13470 666 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ZNF74Q16587 644 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 STEAP4Q687X5 459 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ST7LQ8TDW4 575 aa12.28□□□□□ -0.44
COL6A3-206ENST00000409809 ZBTB45Q96K62 511 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms