RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 OSGIN1Q9UJX0 560 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 CD8B2A6NJW9 211 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 CD8BP10966 210 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 PEBP1P30086 187 aaKnown RBP12.58□□□□□ -0.4
VPS54-203ENST00000409558 CSTF2P33240 577 aaKnown RBP eCLIP12.58□□□□□ -0.43e-9■■■■□ 26.4
VPS54-203ENST00000409558 MPIP34949 423 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 GIPRP48546 466 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 FAM214AQ32MH5 1076 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 ITPRIPL2Q3MIP1 535 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 ANKRD54Q6NXT1 300 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 TMEM80Q96HE8 168 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 MCHR1Q99705 422 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 MMP28Q9H239 520 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 WSB2Q9NYS7 404 aaPredicted RBP12.58□□□□□ -0.4
VPS54-203ENST00000409558 WDFY4Q6ZS81 3184 aa12.58□□□□□ -0.4
VPS54-203ENST00000409558 DVL2O14641 736 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 HRO43593 1189 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 REM1O75628 298 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 ALPPP05187 535 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 CTSBP07858 339 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 CELA2BP08218 269 aaPredicted RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 CMPK1P30085 196 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 SLC9A3P48764 834 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 GXYLT1Q4G148 440 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 ZNF776Q68DI1 518 aaPredicted RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 ADAMTSL4Q6UY14 1074 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 NUDT18Q6ZVK8 323 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 SLC7A5P1Q8MH63 180 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 UBASH3BQ8TF42 649 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 RNFT2Q96EX2 444 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 DIRAS2Q96HU8 199 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 OPALINQ96PE5 141 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 BTBD2Q9BX70 525 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 PCDHGB1Q9Y5G3 927 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 MAN2B1O00754 1011 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 TMCC2O75069 709 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 EGFP01133 1207 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 SDC2P34741 201 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 PCBP4P57723 403 aaKnown RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 RPS21P63220 83 aaKnown RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 RSBN1Q5VWQ0 802 aaPredicted RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 CREB3L4Q8TEY5 395 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 DPH1Q9BZG8 443 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 SAP130Q9H0E3 1048 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 CACYBPQ9HB71 228 aaKnown RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 HHATLQ9HCP6 504 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 ATP13A2Q9NQ11 1180 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 INIPQ9NRY2 104 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 CLDND1Q9NY35 253 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 USP36Q9P275 1121 aaKnown RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 H3BQ06 376 aaPredicted RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 TNFSF8P32971 234 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 EIF2DP41214 584 aaKnown RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 PCYT1AP49585 367 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 ZNF33BQ06732 778 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 FUT5Q11128 374 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 TBC1D19Q8N5T2 526 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 GATSQ8NAP1 163 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 OR7G2Q8NG99 324 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 LINC00615Q96LM1 132 aaPredicted RBP12.57□□□□□ -0.4
VPS54-203ENST00000409558 SLC6A18Q96N87 628 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 SPATA9Q9BWV2 254 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 SFXN1Q9H9B4 322 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 REV1Q9UBZ9 1251 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 ACSL5Q9ULC5 683 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 BOLA1Q9Y3E2 137 aa12.57□□□□□ -0.4
VPS54-203ENST00000409558 SAGP10523 405 aaPredicted RBP12.56□□□□□ -0.4
VPS54-203ENST00000409558 KHKP50053 298 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SHC2P98077 582 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 IKBIPQ70UQ0 350 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 PRSS58Q8IYP2 241 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 OR52P1PQ8NH57 321 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 MROQ9BYG7 248 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 H2AFY2Q9P0M6 372 aaPredicted RBP12.56□□□□□ -0.4
VPS54-203ENST00000409558 MUTYHQ9UIF7 546 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SSR3Q9UNL2 185 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 WDR45Q9Y484 360 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 PCDHGB6Q9Y5F9 930 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 PRSS38A1L453 326 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SERTM1A2A2V5 107 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 PEX12O00623 359 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 P2RX6O15547 441 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 UPK1BO75841 260 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 EPPINO95925 133 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 ADPRHP54922 357 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 RPS25P62851 125 aaKnown RBP12.56□□□□□ -0.4
VPS54-203ENST00000409558 PRR5P85299 388 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 SUN3Q8TAQ9 357 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 MTERF3Q96E29 417 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 BTBD1Q9H0C5 482 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 PRDM7Q9NQW5 492 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 ANKMY1Q9P2S6 941 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 CASKO14936 926 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 ADAP00813 363 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 NR2F6P10588 404 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 GABRB1P18505 474 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 FCARP24071 287 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 VSX2P58304 361 aaPredicted RBP12.56□□□□□ -0.4
VPS54-203ENST00000409558 AGERQ15109 404 aa12.56□□□□□ -0.4
VPS54-203ENST00000409558 GLCCI1Q86VQ1 547 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms