RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 DDX31Q9H8H2 851 aaKnown RBP19.72■□□□□ 0.75
CTCF-202ENST00000401394 SEMA4GQ9NTN9 838 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 DOCK9Q9BZ29 2069 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 PGRMC2O15173 223 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 LATS1O95835 1130 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 ACP2P11117 423 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 ATP6V1E1P36543 226 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 RRAS2P62070 204 aaPredicted RBP19.72■□□□□ 0.75
CTCF-202ENST00000401394 ELOAQ14241 798 aaKnown RBP19.72■□□□□ 0.75
CTCF-202ENST00000401394 GPR176Q14439 515 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 FCRLBQ6BAA4 426 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 SMARCD3Q6STE5 483 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 TCTE3Q8IZS6 198 aa19.72■□□□□ 0.75
CTCF-202ENST00000401394 C6orf106Q9H6K1 298 aaPredicted RBP19.72■□□□□ 0.75
CTCF-202ENST00000401394 POLMQ9NP87 494 aaPredicted RBP19.72■□□□□ 0.75
CTCF-202ENST00000401394 SEC14L5O43304 696 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 LGI1O95970 557 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 RB1P06400 928 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 HLA-DMAP28067 261 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 AHRP35869 848 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 CDH11P55287 796 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 RAB33AQ14088 237 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 KHDRBS2Q5VWX1 349 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 TPGS2Q68CL5 300 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 METTL2AQ96IZ6 378 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 TEFMQ96QE5 360 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 AICDAQ9GZX7 198 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 ENKD1Q9H0I2 346 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 SLC28A3Q9HAS3 691 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 KNL1Q8NG31 2342 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 LOC105369274A0A096LPK9 316 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 FAM170BA6NMN3 283 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 WASH3PC4AMC7 463 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 C4orf51C9J302 202 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 PITPNM1O00562 1244 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 MAGEB4O15481 346 aaPredicted RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 TRAPPC2P0DI81 140 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 TRAPPC2BP0DI82 140 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 ACP5P13686 325 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 SNRPNP63162 240 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 TPBGQ13641 420 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 UBE3DQ7Z6J8 389 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 FAM129CQ86XR2 697 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 OR4N4Q8N0Y3 316 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 SIRT6Q8N6T7 355 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 PLA2G15Q8NCC3 412 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 OR51G2Q8NGK0 314 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 SECISBP2Q96T21 854 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 SOSTQ9BQB4 213 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 EVA1BQ9NVM1 165 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 CXXC1Q9P0U4 656 aaPredicted RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 HEATR5BQ9P2D3 2071 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 LEUTXA8MZ59 168 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 SPINT1O43278 529 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 EIF4EP06730 217 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 PRKAR1AP10644 381 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 ZNF250P15622 560 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 SHC1P29353 583 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 PCBP4P57723 403 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 NTHL1P78549 312 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 ZNF658BQ4V348 819 aaPredicted RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 DDX53Q86TM3 631 aaKnown RBP19.71■□□□□ 0.75
CTCF-202ENST00000401394 PEX5LQ8IYB4 626 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 CPXM2Q8N436 756 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 NATD1Q8N6N6 113 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 ARIH2OSQ8N7S6 290 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 ZNF485Q8NCK3 441 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 TMEM163Q8TC26 289 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 OR5P2Q8WZ92 322 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 ACAD8Q9UKU7 415 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 CDH10Q9Y6N8 788 aa19.71■□□□□ 0.75
CTCF-202ENST00000401394 OR1F1O43749 312 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 C1QBP02746 253 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 POLR2EP19388 210 aaKnown RBP19.7■□□□□ 0.74
CTCF-202ENST00000401394 GABRA5P31644 462 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 CLDN20P56880 219 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 RPTNQ6XPR3 784 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 HSD17B8Q92506 261 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 MRGPRX3Q96LB0 322 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 C19orf43Q9BQ61 176 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 GON7Q9BXV9 100 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 CCDC86Q9H6F5 360 aaKnown RBP19.7■□□□□ 0.74
CTCF-202ENST00000401394 ZNF222Q9UK12 451 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 E9PI62 339 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 KIAA0355O15063 1070 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 PRODHO43272 600 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 EEF1E1O43324 174 aaKnown RBP19.7■□□□□ 0.74
CTCF-202ENST00000401394 HMGN2P05204 90 aaKnown RBP19.7■□□□□ 0.74
CTCF-202ENST00000401394 ZNF30P17039 623 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 C3orf38Q5JPI3 329 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 WDR45BQ5MNZ6 344 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 TCEAL8Q8IYN2 117 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 FAM109AQ8N4B1 249 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 FCRL4Q96PJ5 515 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 COQ7Q99807 217 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 HCAR1Q9BXC0 346 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 GSTK1Q9Y2Q3 226 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 MRPS7Q9Y2R9 242 aaKnown RBP19.7■□□□□ 0.74
CTCF-202ENST00000401394 AP1M2Q9Y6Q5 423 aa19.7■□□□□ 0.74
CTCF-202ENST00000401394 THSD7BQ9C0I4 1608 aa19.7■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms