RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 NARFLQ9H6Q4 476 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 DHX33Q9H6R0 707 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PNO1Q9NRX1 252 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 HMGXB4Q9UGU5 601 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 LCMT1Q9UIC8 334 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 MRTO4Q9UKD2 239 aaKnown RBP3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PILRAQ9UKJ1 303 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 UTS2RQ9UKP6 389 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SLC22A14Q9Y267 594 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 GSTK1Q9Y2Q3 226 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 ETV7Q9Y603 341 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 PBRM1Q86U86 1689 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 SALL1Q9NSC2 1324 aa3.71□□□□□ -1.82
HMGB1-204ENST00000399489 ATP10DQ9P241 1426 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PPIAL4EA0A075B759 164 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ATP6AP2A0A1C7CYW4 349 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LRRC30A6NM36 301 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 TEX46H3BTG2 121 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 BCKDKO14874 412 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LSM1O15116 133 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OR2F2O95006 317 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OAZ2O95190 189 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 VTNP04004 478 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PPIAL4FP0DN26 164 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CCL2P13500 99 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ETS2P15036 469 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 EZRP15311 586 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF23P17027 643 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 TSPAN8P19075 237 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PRKAR2BP31323 418 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 HNRNPH3P31942 346 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OR3A3P47888 321 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CASP4P49662 377 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PSMD7P51665 324 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CCNG1P51959 295 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ATP12AP54707 1039 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PAX5Q02548 391 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ANGPT1Q15389 498 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CDKN3Q16667 212 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF542PQ5EBM4 170 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PTRHD1Q6GMV3 140 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NCCRP1Q6ZVX7 275 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PRUNE1Q86TP1 453 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 STX12Q86Y82 276 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ITPRIPQ8IWB1 547 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 SLC38A6Q8IZM9 456 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LSMEM2Q8N112 164 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RNF149Q8NC42 400 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 DDHD1Q8NEL9 900 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NFAM1Q8NET5 270 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OR11H4Q8NGC9 324 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OR4A15Q8NGL6 344 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 WDR36Q8NI36 951 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RHEBL1Q8TAI7 183 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 OSR1Q8TAX0 266 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 THAP6Q8TBB0 222 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NANPQ8TBE9 248 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LRRC20Q8TCA0 184 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM37Q8WXS4 190 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RND1Q92730 232 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 SEMA4DQ92854 862 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PPP1R16AQ96I34 528 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 AKR1E2Q96JD6 320 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 FAM84BQ96KN1 310 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RIT2Q99578 217 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 AGPAT1Q99943 283 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NLNQ9BYT8 704 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LYRM4Q9HD34 91 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 DAPK2Q9UIK4 370 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF580Q9UK33 172 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 EMCNQ9ULC0 261 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RPH3ALQ9UNE2 315 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RASD1Q9Y272 281 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NCKAP1Q9Y2A7 1128 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 CSDC2Q9Y534 153 aaKnown RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 PPIAL4AQ9Y536 164 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NPTNQ9Y639 398 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 IGKV2D-30A0A075B6S6 120 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 A0A1B0GUA9 196 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 LOC390937A0A1W2PQ73 354 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 TUBAL3A6NHL2 446 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 WASHC1A8K0Z3 465 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 A8MU76 341 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 HHLA1C9JL84 531 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 TMEM178BH3BS89 294 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 GOLGA8MH3BSY2 632 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 J3KR12 359 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 KDELR3O43731 214 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ZNF189O75820 626 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 EML2O95834 649 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ERCC1P07992 297 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ACKR3P25106 362 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RRM2P31350 389 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 AVPR1AP37288 418 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 SLC26A2P50443 739 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ARHGDIAP52565 204 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 NDST2P52849 883 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 GSCP56915 257 aaPredicted RBP3.7□□□□□ -1.82
HMGB1-204ENST00000399489 ST3GAL1Q11201 340 aa3.7□□□□□ -1.82
HMGB1-204ENST00000399489 RCAN2Q14206 197 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms