RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ENOPH1Q9UHY7 261 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 GPR52Q9Y2T5 361 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 SCN2AQ99250 2005 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CEP290O15078 2479 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 A0A0G2JPF8 293 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CPSF4LA6NMK7 179 aaKnown RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 HNRNPCL2B2RXH8 293 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 HNRNPCL3B7ZW38 293 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 EMC8O43402 210 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 HNRNPCL4P0DMR1 293 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 PPP2R1BP30154 601 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 ETV5P41161 510 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CRYBB2P43320 205 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 LSSP48449 732 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 ETV1P50549 477 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 RNF144AP50876 292 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 ZNF311Q5JNZ3 666 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 STEAP3Q658P3 488 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 PLEKHG7Q6ZR37 379 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 KRT73Q86Y46 540 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 ZNF582Q96NG8 517 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 OR2A5Q96R48 311 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 SDHCQ99643 169 aaPredicted RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 ARHGDIGQ99819 225 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 ABCB10Q9NRK6 738 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 EVA1BQ9NVM1 165 aa12.54□□□□□ -0.4
CCDC3-202ENST00000378839 TESQ9UGI8 421 aaKnown RBP12.54□□□□□ -0.4
CCDC3-202ENST00000378839 CCRL2O00421 344 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CTDSP2O14595 271 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 SCG5P05408 212 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CSTF2P33240 577 aaKnown RBP eCLIP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CD79BP40259 229 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 PCYT1AP49585 367 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 SIM1P81133 766 aaPredicted RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ALDH6A1Q02252 535 aaKnown RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ENTPD8Q5MY95 495 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 TMEM92Q6UXU6 159 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 NKAIN4Q8IVV8 208 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 NANOGP1Q8N7R0 232 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 OR52I1Q8NGK6 324 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 OR8J1Q8NGP2 316 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 C9orf43Q8TAL5 461 aaPredicted RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ZCCHC10Q8TBK6 192 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 TMEM80Q96HE8 168 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 MRGPRX1Q96LB2 322 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 PINK1Q9BXM7 581 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 OR6C2Q9NZP2 312 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CCDC59Q9P031 241 aaKnown RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 MKLN1Q9UL63 735 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ENTPD4Q9Y227 616 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 TBX1O43435 398 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 UPK1BO75841 260 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CTHP32929 405 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 RPS19P39019 145 aaKnown RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ID2Q02363 134 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 OCLNQ16625 522 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CASP12Q6UXS9 341 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 FAM26EQ8N5C1 309 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 DIO2Q92813 273 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 TM4SF19Q96DZ7 209 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ARSGQ96EG1 525 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 LRR1Q96L50 414 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 KCNS3Q9BQ31 491 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CNPPD1Q9BV87 410 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 TWSG1Q9GZX9 223 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 SNX7Q9UNH6 387 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 KCNJ13O60928 360 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 SMIM10L1P0DMW3 83 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 TCEA1P23193 301 aaKnown RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 MPIP34949 423 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 AVPR1BP47901 424 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 SEPHS1P49903 392 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 RHAGQ02094 409 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 NCF4Q15080 339 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 DEFB134Q4QY38 66 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ATAT1Q5SQI0 421 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 NUDT18Q6ZVK8 323 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 TMEM52Q8NDY8 209 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 OR56A1Q8NGH5 318 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CDS1Q92903 461 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 COL26A1Q96A83 441 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 SMIM10Q96HG1 83 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 CDCA3Q99618 268 aaPredicted RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 POLDIP3Q9BY77 421 aaKnown RBP12.53□□□□□ -0.4
CCDC3-202ENST00000378839 SLC9A8Q9Y2E8 581 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 COLEC10Q9Y6Z7 277 aa12.53□□□□□ -0.4
CCDC3-202ENST00000378839 ZNF860A6NHJ4 632 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 HCRTR1O43613 425 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 NFATC4Q14934 902 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 SPHARQ15513 63 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 PRRT3Q5FWE3 981 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 FRRS1Q6ZNA5 592 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 SHFQ7M4L6 423 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 ASPGQ86U10 573 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 SIPA1Q96FS4 1042 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 FAM46AQ96IP4 442 aaKnown RBP12.52□□□□□ -0.41
CCDC3-202ENST00000378839 TCEAL2Q9H3H9 227 aaPredicted RBP12.52□□□□□ -0.41
CCDC3-202ENST00000378839 SRMSQ9H3Y6 488 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 GIMAP4Q9NUV9 329 aa12.52□□□□□ -0.41
CCDC3-202ENST00000378839 POU2F3Q9UKI9 436 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms