RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 RHOXF1Q8NHV9 184 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 OR5P2Q8WZ92 322 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 NAT6Q93015 286 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 SLIRPQ9GZT3 109 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 ISPDA4D126 451 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 KHNYNO15037 678 aaKnown RBP12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 AIFM1O95831 613 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 IFNA14P01570 189 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 NR2F6P10588 404 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 TGM1P22735 817 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 CPN2P22792 545 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 EPHA2P29317 976 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 TBCEQ15813 527 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 IFI44LQ53G44 452 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 SNAP47Q5SQN1 464 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 NCCRP1Q6ZVX7 275 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 LACC1Q8IV20 430 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 CCDC71Q8IV32 467 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 ARHGEF39Q8N4T4 335 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 BBS4Q96RK4 519 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 MAPKAP1Q9BPZ7 522 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 NUDT22Q9BRQ3 303 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 DCSTAMPQ9H295 470 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 DSN1Q9H410 356 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 NEUROD4Q9HD90 331 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 SLC35C2Q9NQQ7 365 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 ACSS1Q9NUB1 689 aaPredicted RBP12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 PSORS1C1Q9UIG5 152 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 ENTPD4Q9Y227 616 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 RNF6Q9Y252 685 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 POFUT2Q9Y2G5 429 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 PCDHGA5Q9Y5G8 931 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 A3GALT2U3KPV4 340 aa12.35□□□□□ -0.43
SQSTM1-201ENST00000360718 ADAMTS20P59510 1910 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 SAGE2PA6NJ88 616 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 A8MVJ9 347 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 AIREO43918 545 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 CNOT3O75175 753 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ERAL1O75616 437 aaKnown RBP12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 MED26O95402 600 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 LCKP06239 509 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 SOAT1P35610 550 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 TGFBR2P37173 567 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 CRATP43155 626 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 HSD11B2P80365 405 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 KCNAB1Q14722 419 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 PLA2G2CQ5R387 149 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 AGAP7PQ5VUJ5 663 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ANGPTL8Q6UXH0 198 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 PLEKHG7Q6ZR37 379 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 APH1BQ8WW43 257 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 UBE2FQ969M7 185 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 LYRM4Q9HD34 91 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ENOPH1Q9UHY7 261 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 PMF1-BGLAPU3KQ54 211 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 MN1Q10571 1320 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 A0A1W2PQM1 296 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 LNP1A1A4G5 178 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 GLOD5A6NK44 160 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 CLCA1A8K7I4 914 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 TNFRSF10AO00220 468 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 TAF4O00268 1085 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 NUDT7P0C024 238 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 CHI3L1P36222 383 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 DUSP3P51452 185 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 DAB2P98082 770 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 TNFRSF17Q02223 184 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF404Q494X3 552 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 C18orf63Q68DL7 685 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 USP43Q70EL4 1123 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF605Q86T29 641 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 KMT5CQ86Y97 462 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 AMER2Q8N7J2 671 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 OR10G2Q8NGC3 310 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 KLHL6Q8WZ60 621 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 FEVQ99581 238 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 SLC35A5Q9BS91 424 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 RHNO1Q9BSD3 238 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF556Q9HAH1 456 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ATXN7L1Q9ULK2 861 aaPredicted RBP12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 DAPP1Q9UN19 280 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 TESMINQ9Y4I5 508 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 SNX8Q9Y5X2 465 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 LYVE1Q9Y5Y7 322 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ZNF780BQ9Y6R6 833 aa12.34□□□□□ -0.43
SQSTM1-201ENST00000360718 ASCC3Q8N3C0 2202 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 ZNF860A6NHJ4 632 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 GALR3O60755 368 aaPredicted RBP12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 KRT75O95678 551 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 CDK1P06493 297 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 AQP1P29972 269 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 PRIM2P49643 509 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 EIF2B2P49770 351 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 SEPHS1P49903 392 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 LIM2P55344 173 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 PCBP4P57723 403 aaKnown RBP12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 OLR1P78380 273 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 HSPB3Q12988 150 aa12.33□□□□□ -0.44
SQSTM1-201ENST00000360718 TIGD6Q17RP2 521 aa12.33□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms