RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SMIM10L1P0DMW3 83 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 MAGP20916 626 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 ACSL1P33121 698 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 S100A5P33763 92 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 TNFRSF17Q02223 184 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 PRKCDQ05655 676 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 KIR2DS3Q14952 304 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 FAM111BQ6SJ93 734 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 PAQR6Q6TCH4 344 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC22A16Q86VW1 577 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC16A11Q8NCK7 471 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 DIO2Q92813 273 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 SMIM10Q96HG1 83 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 MRGPRX1Q96LB2 322 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 ZNF582Q96NG8 517 aaPredicted RBP19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 TWSG1Q9GZX9 223 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 EGLN3Q9H6Z9 239 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 SEMA4GQ9NTN9 838 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC13A4Q9UKG4 626 aa19.52■□□□□ 0.71
CCDC88B-203ENST00000359902 P2RX6O15547 441 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 DNAJB6O75190 326 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC35G6P0C7Q6 338 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 ACADMP11310 421 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 ENDOUP21128 410 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 SMSP52788 366 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 PDX1P52945 283 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 ZNF45Q02386 682 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 KHDRBS1Q07666 443 aaKnown RBP eCLIP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 DLX2Q07687 328 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 PRRT3Q5FWE3 981 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 HEPHL1Q6MZM0 1159 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 LYSMD2Q8IV50 215 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 LRRC25Q8N386 305 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 GNPDA2Q8TDQ7 276 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 ADAMTS15Q8TE58 950 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 NR4A3Q92570 626 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 COL26A1Q96A83 441 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 RACGAP1Q9H0H5 632 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 ABCB10Q9NRK6 738 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 TESQ9UGI8 421 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 CFL2Q9Y281 166 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 SAGE2PA6NJ88 616 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 CPSF4LA6NMK7 179 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 TNFSF14O43557 240 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 RASGRP1O95267 797 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 NTN1O95631 604 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 CPN2P22792 545 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 TRHRP34981 398 aaPredicted RBP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 SOX6P35712 828 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 RUNX2Q13950 521 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 TRAM2Q15035 370 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 SNAPC1Q16533 368 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 MFSD12Q6NUT3 480 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 PARP16Q8N5Y8 322 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 OR52I1Q8NGK6 324 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 DIMT1Q9UNQ2 313 aaKnown RBP19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 PEX16Q9Y5Y5 336 aa19.51■□□□□ 0.71
CCDC88B-203ENST00000359902 ATP6V1G1O75348 118 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 PRKAR1BP31321 381 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 ZNF181Q2M3W8 571 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 FAM214AQ32MH5 1076 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 DEFB134Q4QY38 66 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 SIMC1Q8NDZ2 872 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 OR52P1PQ8NH57 321 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 ZCCHC10Q8TBK6 192 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 SERINC2Q96SA4 455 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 CNPPD1Q9BV87 410 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 POLR2J2Q9GZM3 115 aaKnown RBP19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 SAP130Q9H0E3 1048 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 PHF11Q9UIL8 331 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 UGT2A1Q9Y4X1 527 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 SZT2Q5T011 3432 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 ISPDA4D126 451 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 DUXAA6NLW8 204 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 FAM170BA6NMN3 283 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 TBX1O43435 398 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 UGT2B7P16662 529 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 IFNGR2P38484 337 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 CRYBB2P43320 205 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 AVPR1BP47901 424 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 HOXC5Q00444 222 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 ADAM15Q13444 863 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 FCRL6Q6DN72 434 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 MRGPREQ86SM8 312 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 OR4N5Q8IXE1 308 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 GJD3Q8N144 294 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 OR4K14Q8NGD5 310 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 SLC28A3Q9HAS3 691 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 ANKMY1Q9P2S6 941 aa19.5■□□□□ 0.71
CCDC88B-203ENST00000359902 CCNYL3P0C7X3 344 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 ST3GAL3Q11203 375 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 TSPAN31Q12999 210 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 SUZ12Q15022 739 aaKnown RBP19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 CDC73Q6P1J9 531 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 ZNF730Q6ZMV8 503 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 FRRS1Q6ZNA5 592 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 OR8D4Q8NGM9 314 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 CDS1Q92903 461 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 MS4A4EQ96PG1 132 aa19.49■□□□□ 0.71
CCDC88B-203ENST00000359902 EXOSC4Q9NPD3 245 aaKnown RBP19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms