RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 IFNGP01579 166 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 LAMP1P11279 417 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 PEPDP12955 493 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 RPS18P62269 152 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 DDX59Q5T1V6 619 aaKnown RBP eCLIP8.56□□□□□ -1.04
UPF2-202ENST00000357604 LRRC74BQ6ZQY2 392 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 MICU2Q8IYU8 434 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 BRIX1Q8TDN6 353 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 TMBIM1Q969X1 311 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 MOCOSQ96EN8 888 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 HS6ST2Q96MM7 605 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 SECISBP2Q96T21 854 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 PIF1Q9H611 641 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 GIN1Q9NXP7 522 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 DOCK8Q8NF50 2099 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 COL4A3Q01955 1670 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 FIGNL2A6NMB9 653 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 ZNF726A6NNF4 738 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 FGF17O60258 216 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 PNMTP11086 282 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 CYP4B1P13584 511 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 NQO1P15559 274 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 ELAVL4P26378 380 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 PNLIPRP2P54317 469 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 JAZF1Q86VZ6 243 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 OR52P1PQ8NH57 321 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 ZDHHC19Q8WVZ1 309 aaPredicted RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 TRNT1Q96Q11 434 aaKnown RBP8.56□□□□□ -1.04
UPF2-202ENST00000357604 NPAS2Q99743 824 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 PIGUQ9H490 435 aa8.56□□□□□ -1.04
UPF2-202ENST00000357604 IGHV3-20A0A0C4DH32 117 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 A0A1W2PR48 441 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 SH3PXD2BA1X283 911 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 CXCR6O00574 342 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 CD22P20273 847 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 NOS3P29474 1203 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 C19orf57Q0VDD7 668 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 MAP4K2Q12851 820 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 ZSCAN26Q16670 478 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 ZNF658BQ4V348 819 aaPredicted RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 ACER2Q5QJU3 275 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 ZFP1Q6P2D0 407 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 BLOC1S3Q6QNY0 202 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 OR52B2Q96RD2 323 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 CDRT15Q96T59 188 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 ALG2Q9H553 416 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 HAO1Q9UJM8 370 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 TMEM5Q9Y2B1 443 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 IFI6P09912 130 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 DCTP40126 519 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 SPIBQ01892 262 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 LIPEQ05469 1076 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 CLN3Q13286 438 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 EIF2S3LQ2VIR3 472 aaKnown RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 XKR7Q5GH72 579 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 ZNF730Q6ZMV8 503 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 LRRC58Q96CX6 371 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 OR7D2Q96RA2 312 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 BDH2Q9BUT1 245 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 SLC24A3Q9HC58 644 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 MYO7AQ13402 2215 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 XKRYO14609 159 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 UTS2O95399 124 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 EFNA1P20827 205 aaPredicted RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 RPL4P36578 427 aaKnown RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 SUMO3P55854 103 aaPredicted RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 BTG2P78543 158 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 PTGR1Q14914 329 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 SLC10A1Q14973 349 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 SLC2A7Q6PXP3 512 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 FAM198BQ6UWH4 519 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 PHF10Q8WUB8 498 aaKnown RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 SPACA9Q96E40 222 aaPredicted RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 KCMF1Q9P0J7 381 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 LY6G6EA0A0G2JKS1 128 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 C9orf172C9J069 976 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 NPIPA2E9PIF3 369 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 NPIPA3F8WFD2 350 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 GNB5O14775 395 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 CASKO14936 926 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 TP73O15350 636 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 IL33O95760 270 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 PAICSP22234 425 aaKnown RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 GK3PQ14409 553 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 KRTCAP3Q53RY4 240 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 POMZP3Q6PJE2 187 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 C17orf47Q8NEP4 570 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 PINK1Q9BXM7 581 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 OLAHQ9NV23 265 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 ZNF446Q9NWS9 450 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 SIDT1Q9NXL6 827 aaKnown RBP8.55□□□□□ -1.04
UPF2-202ENST00000357604 ARMCX1Q9P291 453 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 POLR1DQ9Y2S0 133 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 PCDHGB6Q9Y5F9 930 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 U3KQA8 63 aa8.55□□□□□ -1.04
UPF2-202ENST00000357604 BCKDKO14874 412 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 CASC3O15234 703 aaKnown RBP8.54□□□□□ -1.04
UPF2-202ENST00000357604 PEX1O43933 1283 aa8.54□□□□□ -1.04
UPF2-202ENST00000357604 PLXNA2O75051 1894 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms